9FEE | pdb_00009fee

Cryo-EM structure of Trypanosoma cruzi glycosomal malate dehydrogenase


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.03 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of Trypanosoma peroxisomal import complex unveils conformational dynamics

Sonani, R.R.Blat, A.Jemiola-Rzeminska, M.Lipinski, O.Patel, S.N.Sood, T.Dubin, G.

(2024) bioRxiv 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
malate dehydrogenase
A, B, C, D
331Trypanosoma cruzi strain CL BrenerMutation(s): 0 
Gene Names: Tc00.1047053506503.69
EC: 1.1.1.37
UniProt
Find proteins for Q4DRD8 (Trypanosoma cruzi (strain CL Brener))
Explore Q4DRD8 
Go to UniProtKB:  Q4DRD8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4DRD8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.03 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Polish National Science CentrePoland2017/26/M/NZ1/00797
Foundation for Polish SciencePolandTEAM TECH CORE FACILITY/2017-4/6
Polish National Science CentrePoland2020/39/B/NZ1/01551

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-29
    Type: Initial release
  • Version 1.1: 2025-06-11
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2025-08-20
    Changes: Author supporting evidence, Data collection