9FNF | pdb_00009fnf

The glycoside hydrolase family 71 (GH71) member AnGH71C from Aspergillus nidulans.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.33 Å
  • R-Value Free: 
    0.176 (Depositor), 0.176 (DCC) 
  • R-Value Work: 
    0.159 (Depositor), 0.159 (DCC) 
  • R-Value Observed: 
    0.160 (Depositor) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural and biochemical basis for activity of Aspergillus nidulans alpha-1,3-glucanases from glycoside hydrolase family 71.

Mazurkewich, S.Widen, T.Karlsson, H.Evenas, L.Ramamohan, P.Wohlert, J.Branden, G.Larsbrink, J.

(2025) Commun Biol 8: 1298-1298

  • DOI: https://doi.org/10.1038/s42003-025-08696-3
  • Primary Citation of Related Structures:  
    9FNF, 9FNG, 9FNH

  • PubMed Abstract: 

    The microbial polysaccharide α-1,3-glucan is an important component of fungal cell walls and dental plaque biofilms, contributing to microbial virulence and biofilm resilience. Glycoside hydrolase family 71 (GH71) includes α-1,3-glucan degrading enzymes which could be exploited for biotechnological applications; however, the family is presently poorly understood. To increase our understanding of GH71, we have performed a phylogenetic analysis of the family and detailed biochemical analysis of two of the five GH71 enzymes encoded by Aspergillus nidulans (AnGH71B and -C). Both are active on soluble α-1,3-glucooligosaccharides but surprisingly only minimally on water-insoluble α-1,3-glucan. Assays on intact and milled A. nidulans biomass indicate that the enzymes act on fungal cell wall glycosidic linkages, likely having roles in cell wall remodelling. Both enzymes utilize an inverting mechanism but differ in specificity and product profiles indicating exo- and endo-like activity for AnGH71B and AnGH71C, respectively. We present the first structure of a GH71 protein, AnGH71C, including structures with carbohydrate ligands. These structures revealed a conserved acidic dyad (DxxE), found to be crucial for activity, and active site water coordination consistent with a classical inverting GH mechanism. This work provides new insights into GH71, highlighting its functional diversity and the enzymes roles in fungal physiology.


  • Organizational Affiliation
    • Department of Life Sciences, Chalmers University of Technology, Gothenburg, Sweden. scott.mazurkewich@chalmers.se.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glycoside hydrolase family 71
A, B
430Aspergillus nidulans FGSC A4Mutation(s): 0 
Gene Names: ANIA_07349
EC: 3.2.1.59
UniProt
Find proteins for G5EB58 (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139))
Explore G5EB58 
Go to UniProtKB:  G5EB58
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG5EB58
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
BTB
Query on BTB

Download Ideal Coordinates CCD File 
D [auth A],
E [auth A],
F [auth A],
G [auth B],
H [auth B]
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C8 H19 N O5
OWMVSZAMULFTJU-UHFFFAOYSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
C [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
NA
Query on NA

Download Ideal Coordinates CCD File 
I [auth B]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.33 Å
  • R-Value Free:  0.176 (Depositor), 0.176 (DCC) 
  • R-Value Work:  0.159 (Depositor), 0.159 (DCC) 
  • R-Value Observed: 0.160 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 137.194α = 90
b = 84.745β = 130.853
c = 103.322γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSweden2020-03618

Revision History  (Full details and data files)

  • Version 1.0: 2025-06-25
    Type: Initial release
  • Version 1.1: 2025-09-10
    Changes: Database references