9FPT | pdb_00009fpt

Crystal structure of carbonic anhydrase II with methyl 4-chloro-3-sulfamoyl-benzoate

• PDB DOI: https://doi.org/10.2210/pdb9FPT/pdb

• Classification: LYASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2024-06-13 Released: 2025-06-25 
• Deposition Author(s): Smirnov, A., Manakova, E.N., Grazulis, S., Paketuryte, V.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.18 Å
• R-Value Free: 
  0.175 (Depositor), 0.176 (DCC) 
• R-Value Work: 
  0.144 (Depositor), 0.149 (DCC) 
• R-Value Observed: 
  0.147 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of carbonic anhydrase II with methyl 4-chloro-3-sulfamoyl-benzoate

Smirnov, A., Manakova, E.N., Grazulis, S., Paketuryte, V.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 29.87 kDa 
• Atom Count: 2,345 
• Modeled Residue Count: 258 
• Deposited Residue Count: 260 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carbonic anhydrase 2	A	260	Homo sapiens	Mutation(s): 0  Gene Names: CA2 EC: 4.2.1.1 (PDB Primary Data), 4.2.1.69 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P00918 (Homo sapiens) Explore P00918  Go to UniProtKB:  P00918
PHAROS:  P00918 GTEx:  ENSG00000104267

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A1IEO (Subject of Investigation/LOI)	C [auth A]	methyl 4-chloranyl-3-sulfamoyl-benzoate C8 H8 Cl N O4 S IPQHNKPCTMMTLI-UHFFFAOYSA-N
BCN	F [auth A]	BICINE C6 H13 N O4 FSVCELGFZIQNCK-UHFFFAOYSA-N
DMS	E [auth A]	DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N
ZN	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
NA	D [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.18 Å
• R-Value Free:  0.175 (Depositor), 0.176 (DCC) 
• R-Value Work:  0.144 (Depositor), 0.149 (DCC) 
• R-Value Observed: 0.147 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.126	α = 90
b = 40.928	β = 103.99
c = 71.71	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SCALA	data scaling
XDS	data reduction
Coot	model building
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-06-25 
Deposition Author(s): Smirnov, A., Manakova, E.N., Grazulis, S., Paketuryte, V.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2025-06-25
  Type: Initial release