9G92 | pdb_00009g92

Crystal structure of thioredoxin reductase from Cryptosporidium parvum in the "in" conformation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 
    0.212 (Depositor), 0.219 (DCC) 
  • R-Value Work: 
    0.177 (Depositor), 0.186 (DCC) 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Targeting Apicomplexan Parasites: Structural and Functional Characterization of Cryptosporidium Thioredoxin Reductase as a Novel Drug Target.

Gabriele, F.Bogard, J.A.Palerma, M.Ardini, M.Byrne, M.E.Chen, X.M.Petukhov, P.A.Ippoliti, R.Angelucci, F.Williams, D.L.

(2025) Biochemistry 

  • DOI: https://doi.org/10.1021/acs.biochem.5c00059
  • Primary Citation of Related Structures:  
    9G92, 9GEZ, 9H9C

  • PubMed Abstract: 

    Cryptosporidiosis poses a significant health threat to young children and immunocompromised individuals due to the lack of effective therapies. Here, we demonstrate that the Cryptosporidium parvum redox system is fundamentally different from their human host. Humans possess independent glutathione (GSH) and thioredoxin (Trx) pathways. Cryptosporidium lacks authentic glutathione reductase (GR), and we hypothesize that it most likely utilizes the Trx reductase (TrxR) plus Trx couple to maintain GSH in its reduced state. Given the central role of CpTrxR in the parasite's redox homeostasis, we focus on its functional and structural characterization. We find that the combination of CpTrxR and C. parvum Trx efficiently reduces oxidized GSH, in effect functioning as a GR. Auranofin, a gold-containing compound, is known to kill parasites in culture, and here we demonstrate that CpTrxR is irreversibly inhibited by this compound. The crystallographic structures of CpTrxR, a type II TrxR characterized by the distinctive C-terminal -CGGGKCG motif found exclusively in apicomplexan parasites, including Plasmodium spp., the causative agents of malaria, are presented. Our study characterizes three unprecedented catalytically competent intermediates of the C-terminal tail in the so-called "in" conformations, providing insights into the structural and functional properties of type II TrxR. These findings offer valuable information for the design of CpTrxR inhibitors, addressing the pressing need for new therapeutic options against cryptosporidiosis, particularly in populations where current treatments are insufficiently effective.


  • Organizational Affiliation

    Department of Life, Health and Environmental Sciences, University of L'Aquila, L'Aquila 67100, Italy.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thioredoxin reductaseA [auth AAA],
B [auth BBB]
521Cryptosporidium parvumMutation(s): 0 
Gene Names: TRx
UniProt
Find proteins for C8CCG0 (Cryptosporidium parvum)
Explore C8CCG0 
Go to UniProtKB:  C8CCG0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC8CCG0
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
FAD (Subject of Investigation/LOI)
Query on FAD

Download Ideal Coordinates CCD File 
C [auth AAA],
F [auth BBB]
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
PEG
Query on PEG

Download Ideal Coordinates CCD File 
E [auth AAA],
H [auth BBB]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
DMS
Query on DMS

Download Ideal Coordinates CCD File 
D [auth AAA],
G [auth BBB]
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free:  0.212 (Depositor), 0.219 (DCC) 
  • R-Value Work:  0.177 (Depositor), 0.186 (DCC) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 72.866α = 90
b = 74.323β = 90
c = 188.748γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI177493

Revision History  (Full details and data files)

  • Version 1.0: 2025-05-07
    Type: Initial release
  • Version 1.1: 2025-05-14
    Changes: Database references