9H5B | pdb_00009h5b

Tail fibre of Haloferax tailed virus 1

PDB DOI: https://doi.org/10.2210/pdb9H5B/pdb
EM Map EMD-51883: EMDB EMDataResource

Classification: VIRUS
Organism(s): Haloferax tailed virus 1
Mutation(s): No

Deposited: 2024-10-22 Released: 2025-08-27
Deposition Author(s): Zhang, D., Daum, B., Isupov, M.N., McLaren, M.
Funding Organization(s): European Research Council (ERC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

CryoEM structure of Haloferax tailed virus

Zhang, D., Daum, B., Isupov, M.N., McLaren, M., Oksanen, H., Quax, T.E.F., Schwarzer, S., Gold, V.A.M., Stuart, W.

To be published.

Macromolecule Content

Total Structure Weight: 240.77 kDa
Atom Count: 9,801
Modeled Residue Count: 1,342
Deposited Residue Count: 2,283
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tail fiber protein of Haloferax tailed virus 1 gp42	A [auth BG], B [auth BH], C [auth BI]	443	Haloferax tailed virus 1	Mutation(s): 0
UniProt
Find proteins for A0A410N721 (Haloferax tailed virus 1) Explore A0A410N721 Go to UniProtKB: A0A410N721
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A410N721
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Baseplate hub	D [auth BE]	954	Haloferax tailed virus 1	Mutation(s): 0
UniProt
Find proteins for A0A410N6T6 (Haloferax tailed virus 1) Explore A0A410N6T6 Go to UniProtKB: A0A410N6T6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A410N6T6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN (Subject of Investigation/LOI) Query on ZN Download Ideal Coordinates CCD File SDF format, chain I [auth BG] SDF format, chain H [auth BG] MOL2 format, chain I [auth BG] MOL2 format, chain H [auth BG] mmCIF format, chain I [auth BG] mmCIF format, chain H [auth BG]	H [auth BG], I [auth BG]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain H [auth BG] Focus chain I [auth BG] Interactions & Density Focus chain H [auth BG] Focus chain I [auth BG]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain E [auth BG] SDF format, chain F [auth BG] SDF format, chain G [auth BG] SDF format, chain K [auth BH] SDF format, chain L [auth BH] SDF format, chain M [auth BI] SDF format, chain N [auth BI] SDF format, chain O [auth BE] SDF format, chain J [auth BH] MOL2 format, chain E [auth BG] MOL2 format, chain F [auth BG] MOL2 format, chain G [auth BG] MOL2 format, chain K [auth BH] MOL2 format, chain L [auth BH] MOL2 format, chain M [auth BI] MOL2 format, chain N [auth BI] MOL2 format, chain O [auth BE] MOL2 format, chain J [auth BH] mmCIF format, chain E [auth BG] mmCIF format, chain F [auth BG] mmCIF format, chain G [auth BG] mmCIF format, chain K [auth BH] mmCIF format, chain L [auth BH] mmCIF format, chain M [auth BI] mmCIF format, chain N [auth BI] mmCIF format, chain O [auth BE] mmCIF format, chain J [auth BH]	E [auth BG] F [auth BG] G [auth BG] J [auth BH] K [auth BH] E [auth BG], F [auth BG], G [auth BG], J [auth BH], K [auth BH], L [auth BH], M [auth BI], N [auth BI], O [auth BE]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain E [auth BG] Focus chain F [auth BG] Focus chain G [auth BG] Focus chain J [auth BH] Focus chain K [auth BH] Focus chain L [auth BH] Focus chain M [auth BI] Focus chain N [auth BI] Focus chain O [auth BE] Interactions & Density Focus chain E [auth BG] Focus chain F [auth BG] Focus chain G [auth BG] Focus chain J [auth BH] Focus chain K [auth BH] Focus chain L [auth BH] Focus chain M [auth BI] Focus chain N [auth BI] Focus chain O [auth BE]