9HZO | pdb_00009hzo

270 A C1 SynPspA H1-5 rod after incubation with EPL


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The bacterial ESCRT-III PspA rods thin lipid tubules and increase membrane curvature through helix alpha 0 interactions.

Hudina, E.Schott-Verdugo, S.Junglas, B.Kutzner, M.Ritter, I.Hellmann, N.Schneider, D.Gohlke, H.Sachse, C.

(2025) Proc Natl Acad Sci U S A 122: e2506286122-e2506286122

  • DOI: https://doi.org/10.1073/pnas.2506286122
  • Primary Citation of Related Structures:  
    9HZM, 9HZN, 9HZO, 9HZP, 9HZQ, 9HZR, 9HZS, 9HZT, 9HZU, 9HZV, 9HZW, 9HZX, 9HZY, 9HZZ, 9I00, 9I01

  • PubMed Abstract: 

    The phage shock protein A (PspA), a bacterial member of the endosomal sorting complexes required for transport (ESCRT)-III superfamily, forms rod-shaped helical assemblies that internalize membrane tubules. The N-terminal helix α0 of PspA (and other ESCRT-III members) has been suggested to act as a membrane anchor; the detailed mechanism, however, of how it binds to membranes and eventually triggers membrane fusion and/or fission events remains unclear. By solving a total of 15 cryoelectron microscopy (cryo-EM) structures of PspA and a truncation lacking the N-terminal helix α0 in the presence of Escherichia coli polar lipid membranes, we show in molecular detail how PspA interacts with and remodels membranes: Binding of the N-terminal helix α0 in the outer tubular membrane leaflet induces membrane curvature, supporting membrane tubulation by PspA. Detailed molecular dynamics simulations and free energy computations of interactions between the helix α0 and negatively charged membranes suggest a compensating mechanism between helix-membrane interactions and the energy contributions required for membrane bending. The energetic considerations are in line with the membrane structures observed in the cryo-EM images of tubulated membrane vesicles, fragmented vesicles inside tapered PspA rods, and shedded vesicles emerging at the thinner PspA rod ends. Our results provide insights into the molecular determinants and a potential mechanism of vesicular membrane remodeling mediated by a member of the ESCRT-III superfamily.


  • Organizational Affiliation
    • Ernst-Ruska Centre for Microscopy and Spectroscopy with Electrons, ER-C-3: Structural Biology, Forschungszentrum Jülich, Jülich 52425, Germany.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chloroplast membrane-associated 30 kD protein223Synechocystis sp. PCC 6803Mutation(s): 0 
Gene Names: im30
UniProt
Find proteins for P74717 (Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa))
Explore P74717 
Go to UniProtKB:  P74717
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP74717
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySA 1882/6-1
German Research Foundation (DFG)GermanySCHN 690/16-1
German Research Foundation (DFG)GermanySFB1551
German Research Foundation (DFG)GermanySFB1552
German Research Foundation (DFG)GermanySFB1208

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-13
    Type: Initial release