9LMS | pdb_00009lms

Crystal structure of Pichia pastoris-expressed FAST-PETase-N212A/K233C/S282C variant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 
    0.171 (Depositor), 0.184 (DCC) 
  • R-Value Work: 
    0.138 (Depositor), 0.152 (DCC) 
  • R-Value Observed: 
    0.140 (Depositor) 

Starting Model: experimental
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Literature

Combined approaches to enhance the Pichia pastoris-expressed PET hydrolase.

Li, X.Huang, J.W.Ning, Z.Huang, S.Zeng, C.Zeng, Z.Ji, R.Peng, R.Liu, X.Min, J.Chen, C.C.Guo, R.T.

(2025) Int J Biol Macromol : 145862-145862

  • DOI: https://doi.org/10.1016/j.ijbiomac.2025.145862
  • Primary Citation of Related Structures:  
    9LMS, 9LMT, 9LMU, 9LMV, 9LMW, 9LMX

  • PubMed Abstract: 

    Enzymatic degradation of polyethylene terephthalate (PET) provides a sustainable and promising strategy for the recycling of plastic waste. Herein, we employed site-directed mutagenesis and machine learning methods to further enhance the performance of an efficient mutant of IsPETase, FAST-PETase-N212A, and resulting in seven variants with enhanced activity. We also found that the α3-β5 loop containing the T140D mutation plays a significant role in both type I and type II cutinases. Subsequently, we determined the complex structures of two activity-elevated mutants with the PET analogue mono(2-hydroxyethyl)terephthalic acid, revealing a different binding mode. Finally, to facilitate the industrial application of PET hydrolases, we exploited the industrial strain Pichia pastoris to express the activity-enhanced mutants. Compared with E. coli-produced proteins, these mutants expressed by P. pastoris exhibited higher activity and thermal stability.


  • Organizational Affiliation

    Zhejiang Key Laboratory of Medical Epigenetics, Hubei Hongshan Laboratory, Department of Immunology and Pathogen Biology, School of Basic Medical Sciences, Hangzhou Normal University, 311121 Hangzhou, China; State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Poly(ethylene terephthalate) hydrolase262Piscinibacter sakaiensisMutation(s): 3 
Gene Names: ISF6_4831
EC: 3.1.1.101
UniProt
Find proteins for A0A0K8P6T7 (Piscinibacter sakaiensis)
Explore A0A0K8P6T7 
Go to UniProtKB:  A0A0K8P6T7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0K8P6T7
Glycosylation
Glycosylation Sites: 4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free:  0.171 (Depositor), 0.184 (DCC) 
  • R-Value Work:  0.138 (Depositor), 0.152 (DCC) 
  • R-Value Observed: 0.140 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51α = 90
b = 51.018β = 90
c = 83.971γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
SAINTdata scaling
SAINTdata reduction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-23
    Type: Initial release