9MO8 | pdb_00009mo8

Structure of native murine cardiac thin filament at pCa=5.8 in Ca2+-free state (upper strand)

  • Classification: MOTOR PROTEIN
  • Organism(s): Mus musculus
  • Mutation(s): No 

  • Deposited: 2024-12-25 Released: 2025-05-28 
  • Deposition Author(s): Risi, C.M., Galkin, V.E.
  • Funding Organization(s): National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.20 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The role of the troponin T interactions with actin in regulation of cardiac thin filament revealed by the troponin T pathogenic variant Ile79Asn.

Risi, C.M.Landim-Vieira, M.Belknap, B.Chase, P.B.Pinto, J.R.Galkin, V.E.

(2025) J Mol Cell Cardiol 204: 55-67

  • DOI: https://doi.org/10.1016/j.yjmcc.2025.05.005
  • Primary Citation of Related Structures:  
    9E2E, 9MO4, 9MO5, 9MO6, 9MO7, 9MO8, 9MO9, 9MOA, 9MOB, 9MOC, 9MOD, 9MOI, 9MOK, 9MOL, 9MOM, 9MON, 9MOO, 9MOP, 9MOU, 9MOW, 9MOX

  • PubMed Abstract: 

    Cardiac muscle contraction/relaxation cycle depends on the rising and falling Ca 2+ levels in sarcomeres that control the extent of interactions between myosin-based thick and actin-based thin filaments. Cardiac thin filament (cTF) consists of actin, tropomyosin (Tm) that regulates myosin binding to actin, and troponin complex that governs Tm position upon Ca 2+ -binding. Troponin has three subunits - Ca 2+ -binding troponin C (TnC), Tm stabilizing troponin T (TnT), and inhibitory troponin I (TnI). TnT N-terminus (TnT1) interactions with actin stabilize the inhibited state of cTF. TnC, TnI, and Tm work in concert to control actomyosin interactions. Cryo-electron microscopy (cryo-EM) provided factual structures of healthy cTF, but structures of cTF carrying missense mutations linked to human cardiomyopathy are unknown. Variant Ile79Asn in human cardiac TnT (TnT-I79N) increases myofilament Ca 2+ sensitivity and slows cross-bridge kinetics, leading to severe hypertrophic/restrictive cardiomyopathy. Here, we used TnT-I79N mutation as a tool to examine the role of TnT1 in the complex mechanism of cTF regulation. Comparison of the cryo-EM structures of murine wild type and TnT-I79N native cTFs at systolic Ca 2+ levels (pCa = 5.8) demonstrates that TnT-I79N causes 1) dissociation of the TnT1 loop from its actin interface that results in Tm release to a more activated position, 2) reduced interaction of TnI C-terminus with actin-Tm, and 3) increased frequency of Ca 2+ -bound regulatory units. Our data indicate that the TnT1 loop is a crucial element of the allosteric regulatory network that couples Tn subunits and Tm to maintain adequate cTF response to physiological Ca 2+ levels during a heartbeat.


  • Organizational Affiliation

    Department of Biomedical and Translational Sciences, Macon & Joan Brock Virginia Health Sciences at Old Dominion University, Norfolk, VA 23507, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Actin, alpha cardiac muscle 1
A, B, C, D, E
A, B, C, D, E, F, G
377Mus musculusMutation(s): 0 
EC: 3.6.4
UniProt & NIH Common Fund Data Resources
Find proteins for P68033 (Mus musculus)
Explore P68033 
Go to UniProtKB:  P68033
IMPC:  MGI:87905
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UniProt GroupP68033
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Troponin C, slow skeletal and cardiac muscles161Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P19123 (Mus musculus)
Explore P19123 
Go to UniProtKB:  P19123
IMPC:  MGI:98779
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UniProt GroupP19123
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Troponin I, cardiac muscle211Mus musculusMutation(s): 0 
UniProt
Find proteins for P48787 (Mus musculus)
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UniProt GroupP48787
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform A2 of Troponin T, cardiac muscle
J, K
291Mus musculusMutation(s): 0 
UniProt
Find proteins for P50752 (Mus musculus)
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UniProt GroupP50752
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Tropomyosin alpha-1 chain
L, M, N, O
284Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P58771 (Mus musculus)
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Go to UniProtKB:  P58771
IMPC:  MGI:98809
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UniProt GroupP58771
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Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download Ideal Coordinates CCD File 
BA [auth G]
P [auth A]
R [auth B]
T [auth C]
V [auth D]
BA [auth G],
P [auth A],
R [auth B],
T [auth C],
V [auth D],
X [auth E],
Z [auth F]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
AA [auth F]
CA [auth G]
Q [auth A]
S [auth B]
U [auth C]
AA [auth F],
CA [auth G],
Q [auth A],
S [auth B],
U [auth C],
W [auth D],
Y [auth E]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.20 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesR01 HL160966

Revision History  (Full details and data files)

  • Version 1.0: 2025-05-28
    Type: Initial release
  • Version 1.1: 2025-07-02
    Changes: Data collection, Database references