9MSP | pdb_00009msp

Crystal structure of MPXV A35R in complex with neutralizing antibody EV35-7

  • Classification: IMMUNE SYSTEM
  • Organism(s): Monkeypox virus, Homo sapiens
  • Expression System: Cricetulus griseus
  • Mutation(s): No 

  • Deposited: 2025-01-10 Released: 2025-09-10 
  • Deposition Author(s): Yuan, M., Wilson, I.A.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 
    0.250 (Depositor), 0.247 (DCC) 
  • R-Value Work: 
    0.211 (Depositor), 0.210 (DCC) 
  • R-Value Observed: 
    0.213 (Depositor) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Human monoclonal antibodies targeting A35 protect from death caused by mpox.

Fantin, R.F.Yuan, M.Park, S.C.Bozarth, B.Cohn, H.Ignacio, M.Earl, P.Civljak, A.Laghlali, G.Zhang, D.Zhu, X.Crandell, J.Monteiro, V.Clark, J.J.Cotter, C.Burkhardt, M.Singh, G.Warang, P.Garcia-Bernalt Diego, J.Srivastava, K.Lugo, L.A.Pischel, L.Yildirim, I.Omer, S.B.da Silva, D.Krammer, F.Bajic, G.Simon, V.Schotsaert, M.Lucas, C.Wilson, I.A.Moss, B.Coelho, C.H.

(2025) Cell 

  • DOI: https://doi.org/10.1016/j.cell.2025.08.004
  • Primary Citation of Related Structures:  
    9MSN, 9MSO, 9MSP

  • PubMed Abstract: 

    The 2022 mpox outbreak highlighted the serious threat of monkeypox virus (MPXV), yet effective treatments are lacking. From an mpox-convalescent individual, we identified three high-affinity human monoclonal antibodies (mAbs) (named EV35-2, EV35-6, and EV35-7) that target the A35 protein in MPXV. These antibodies block viral spread in vitro and protect mice against lethal MPXV and vaccinia virus infection via both Fc-dependent and independent mechanisms. Levels of serum antibodies targeting the same epitopes are increased in mpox-convalescent humans, and higher levels of these antibodies in the sera are linked to shorter symptom duration and no hospitalization. Systems-level multivariate analysis indicated that mpox-convalescent serum antibodies targeting the same epitopic region as these three mAbs may function cooperatively, with additive associations to clinical protection. Two of the antibodies use a conserved IGHD2-21-encoded CxGGDCx motif in their CDRH3 region to bind a highly conserved poxvirus epitope. These findings establish A35 as a critical therapeutic target and highlight A35-specific mAbs as promising candidates for next-generation orthopoxvirus treatments.


  • Organizational Affiliation
    • Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA; Center for Vaccine Research and Pandemic Preparedness, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein OPG161A [auth E],
B [auth F],
E [auth A],
F [auth B]
100Monkeypox virusMutation(s): 0 
Gene Names: OPG161MPXVgp145
UniProt
Find proteins for A0A7H0DND2 (Monkeypox virus)
Explore A0A7H0DND2 
Go to UniProtKB:  A0A7H0DND2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7H0DND2
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
EV35-7 heavy chainC [auth H],
G [auth C]
225Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
EV35-7 light chainD [auth L],
H [auth D]
212Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free:  0.250 (Depositor), 0.247 (DCC) 
  • R-Value Work:  0.211 (Depositor), 0.210 (DCC) 
  • R-Value Observed: 0.213 (Depositor) 
Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 103.339α = 90
b = 107.886β = 90
c = 268.423γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesU19 AI142737
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesU19 AI168631
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesU54CA267776

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-10
    Type: Initial release