4RHV

THE USE OF MOLECULAR-REPLACEMENT PHASES FOR THE REFINEMENT OF THE HUMAN RHINOVIRUS 14 STRUCTURE


ChainDomainClassArchitectureTopologyHomology
A2.60.120.20 Mainly Beta Sandwich Jelly Rolls
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls
C2.60.120.20 Mainly Beta Sandwich Jelly Rolls
D4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
APF00910RNA helicase (RNA_helicase)RNA helicaseThis family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.Domain
APF005483C cysteine protease (picornain 3C) (Peptidase_C3)3C cysteine protease (picornain 3C)- Family
APF00947Picornavirus core protein 2A (Pico_P2A)Picornavirus core protein 2AThis protein is a protease, involved in cleavage of the polyprotein.Domain
APF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
APF00680Viral RNA-dependent RNA polymerase (RdRP_1)Viral RNA-dependent RNA polymerase- Family
APF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain
APF01552Picornavirus 2B protein (Pico_P2B)Picornavirus 2B protein- Family
APF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family
BPF00910RNA helicase (RNA_helicase)RNA helicaseThis family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.Domain
BPF005483C cysteine protease (picornain 3C) (Peptidase_C3)3C cysteine protease (picornain 3C)- Family
BPF00947Picornavirus core protein 2A (Pico_P2A)Picornavirus core protein 2AThis protein is a protease, involved in cleavage of the polyprotein.Domain
BPF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
BPF00680Viral RNA-dependent RNA polymerase (RdRP_1)Viral RNA-dependent RNA polymerase- Family
BPF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain
BPF01552Picornavirus 2B protein (Pico_P2B)Picornavirus 2B protein- Family
BPF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family
CPF00910RNA helicase (RNA_helicase)RNA helicaseThis family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.Domain
CPF005483C cysteine protease (picornain 3C) (Peptidase_C3)3C cysteine protease (picornain 3C)- Family
CPF00947Picornavirus core protein 2A (Pico_P2A)Picornavirus core protein 2AThis protein is a protease, involved in cleavage of the polyprotein.Domain
CPF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
CPF00680Viral RNA-dependent RNA polymerase (RdRP_1)Viral RNA-dependent RNA polymerase- Family
CPF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain
CPF01552Picornavirus 2B protein (Pico_P2B)Picornavirus 2B protein- Family
CPF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family
DPF00910RNA helicase (RNA_helicase)RNA helicaseThis family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.Domain
DPF005483C cysteine protease (picornain 3C) (Peptidase_C3)3C cysteine protease (picornain 3C)- Family
DPF00947Picornavirus core protein 2A (Pico_P2A)Picornavirus core protein 2AThis protein is a protease, involved in cleavage of the polyprotein.Domain
DPF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
DPF00680Viral RNA-dependent RNA polymerase (RdRP_1)Viral RNA-dependent RNA polymerase- Family
DPF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain
DPF01552Picornavirus 2B protein (Pico_P2B)Picornavirus 2B protein- Family
DPF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
1HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
2HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)
3HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)
4HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)