6H50

Crystal structure of human KDM5B in complex with compound 34a


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
APF02373JmjC domain, hydroxylase (JmjC)JmjC domain, hydroxylaseThe JmjC domain belongs to the Cupin superfamily [3]. JmjC-domain proteins may be protein hydroxylases that catalyse a novel histone modification [4]. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the ...The JmjC domain belongs to the Cupin superfamily [3]. JmjC-domain proteins may be protein hydroxylases that catalyse a novel histone modification [4]. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalysing hydroxylation [5].
Domain
APF00628PHD-finger (PHD)PHD-fingerPHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3].Domain
APF02928C5HC2 zinc finger (zf-C5HC2)C5HC2 zinc fingerPredicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [1]. This domain may have a DNA binding function.Domain
APF02375jmjN domain (JmjN)jmjN domain- Family
APF08429PLU-1-like protein (PLU-1)PLU-1-like protein- Family
APF01388ARID/BRIGHT DNA binding domain (ARID)ARID/BRIGHT DNA binding domainThis domain is know as ARID for AT-Rich Interaction Domain [1], and also known as the BRIGHT domain [3].Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ALysine-specific demethylase 5B,Lysine-specific demethylase 5B