6N8L

Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
LPF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
LPF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
APF04981NMD3 family (NMD3)NMD3 family- Family
JPF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
KPF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
MPF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
NPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
OPF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
PPF12171Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz)Zinc-finger double-stranded RNA-binding- Family
QPF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
RPF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
SPF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
TPF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
UPF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
VPF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
WPF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
XPF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
YPF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
ZPF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
AAPF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
BAPF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
CAPF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
CPF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
CPF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
DAPF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
EAPF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
FAPF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
GAPF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
HAPF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
IAPF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
JAPF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
JAPF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
KAPF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
KAPF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
LAPF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
LAPF00467KOW motif (KOW)KOW motif- Family
MAPF01912eIF-6 family (eIF-6)eIF-6 family- Family
DPF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
NAPF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
OAPF10338Protein of unknown function (DUF2423) (DUF2423)Protein of unknown function (DUF2423)- Family
PAPF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
PAPF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
QAPF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
QAPF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
RAPF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
SAPF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
EPF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
FPF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
FPF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
FPF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
GPF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
GPF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
HPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
IPF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F60S ribosomal protein L7-A
v60S ribosomal export protein NMD3
E60S ribosomal protein L6-A
e60S ribosomal protein L32
f60S ribosomal protein L33-A
G60S ribosomal protein L8-A
g60S ribosomal protein L34-A
IBud site selection protein 20
H60S ribosomal protein L9-A
h60S ribosomal protein L35-A
i60S ribosomal protein L36-A
sRibosomal Protein uL1none none none
j60S ribosomal protein L37-A
k60S ribosomal protein L38
L60S ribosomal protein L13-A
l60S ribosomal protein L39
M60S ribosomal protein L14-A
p60S ribosomal protein L43-A
N60S ribosomal protein L15-A
uRibosome biogenesis protein RLP24
O60S ribosomal protein L16-A
P60S ribosomal protein L17-A
A60S ribosomal protein L2-A
Q60S ribosomal protein L18-A
R60S ribosomal protein L19-A
S60S ribosomal protein L20-A
T60S ribosomal protein L21-A
U60S ribosomal protein L22-A
V60S ribosomal protein L23-A
WRibosome assembly factor MRT4
X60S ribosomal protein L25
Y60S ribosomal protein L26-A
yEukaryotic translation initiation factor 6
a60S ribosomal protein L28
Z60S ribosomal protein L27-A
zUPF0642 protein YBL028C
D60S ribosomal protein L5
J60S ribosomal protein L11-A
q60S ribosomal protein L42-A
o60S ribosomal protein L29
1Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNAnone none none
25S rRNAnone none none
35.8S rRNAnone none none
B60S ribosomal protein L3
bNucleolar GTP-binding protein 1
C60S ribosomal protein L4-A
c60S ribosomal protein L30
d60S ribosomal protein L31-A