6N8M

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
DPF00782Dual specificity phosphatase, catalytic domain (DSPc)Dual specificity phosphatase, catalytic domainSer/Thr and Tyr protein phosphatases. The enzyme's tertiary fold is highly similar to that of tyrosine-specific phosphatases, except for a "recognition" region [2].Domain
EPF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
EPF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
FPF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
GPF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
GPF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
HPF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
HPF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
IPF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
LPF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
NPF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
PPF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
QPF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
SPF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
TPF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
UPF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
VPF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
XPF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
YPF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
ZPF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
AAPF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
BAPF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
CAPF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
CAPF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
FAPF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
HAPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
JAPF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
KAPF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
LAPF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
PAPF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
RAPF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
RAPF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
SAPF04981NMD3 family (NMD3)NMD3 family- Family
JPF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
JPF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
KPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
MPF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
MPF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
OPF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
WPF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
DAPF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
DAPF00467KOW motif (KOW)KOW motif- Family
EAPF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
GAPF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
IAPF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
MAPF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
NAPF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
OAPF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
QAPF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
TAPF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
TAPF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
UAPF01912eIF-6 family (eIF-6)eIF-6 family- Family

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ASaccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNAnone none none
B5S rRNAnone none none
C5.8S RNAnone none none
YTyrosine-protein phosphatase YVH1
D60S ribosomal protein L2-A
E60S ribosomal protein L3
F60S ribosomal protein L4-A
G60S ribosomal protein L5
H60S ribosomal protein L6-A
K60S ribosomal protein L9-A
N60S ribosomal protein L13-A
Q60S ribosomal protein L42-A
R60S ribosomal protein L43-A
SRibosomal Protein uL1none none none
a60S ribosomal protein L15-A
b60S ribosomal protein L16-A
c60S ribosomal protein L17-A
d60S ribosomal protein L18-A
f60S ribosomal protein L20-A
g60S ribosomal protein L21-A
h60S ribosomal protein L22-A
i60S ribosomal protein L23-A
j60S ribosomal protein L24-A
k60S ribosomal protein L25
n60S ribosomal protein L28
p60S ribosomal protein L30
r60S ribosomal protein L32
s60S ribosomal protein L33-A
t60S ribosomal protein L34-A
x60S ribosomal protein L38
zUbiquitin-60S ribosomal protein L40
V60S ribosomal export protein NMD3
I60S ribosomal protein L7-A
J60S ribosomal protein L8-A
M60S ribosomal protein L11-A
O60S ribosomal protein L14-A
e60S ribosomal protein L19-A
l60S ribosomal protein L26-A
m60S ribosomal protein L27-A
o60S ribosomal protein L29
q60S ribosomal protein L31-A
u60S ribosomal protein L35-A
v60S ribosomal protein L36-A
w60S ribosomal protein L37-A
y60S ribosomal protein L39
LRibosomal protein L12
XEukaryotic translation initiation factor 6