6GZ3

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
IPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
LPF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
MPF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PPF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
RPF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
SPF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
SPF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
VPF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
ZPF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
BAPF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
BAPF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
CAPF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
CAPF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
DAPF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
DAPF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
GAPF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
OAPF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
OAPF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
WAPF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Family
XAPF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
XAPF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
ABPF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
GBPF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
MBPF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
MBPF00467KOW motif (KOW)KOW motif- Family
QBPF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
RBPF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
WBPF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
BCPF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
QPF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
TPF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
YPF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
HAPF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
IBPF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
JBPF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
LBPF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
LBPF00467KOW motif (KOW)KOW motif- Family
GPF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
YBPF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
HPF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
CCPF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
ECPF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
FCPF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
FCPF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A228S ribosomal RNAnone none none
Bvap/P-site tRNAnone none none
BxmRNAnone none none
Bwpe/E-site-tRNAnone none none
B118S ribosomal RNAnone none none
BDribosomal protein uS3none none none
BM40S ribosomal protein S12
BPribosomal protein uS19none none none
BQribosomal protein uS9none none none
BRribosomal protein eS17
BSribosomal protein uS13
BTribosomal protein eS19none none none
BUribosomal protein uS10none none none
BZribosomal protein eS25
Bdribosomal protein uS14
BfRibosomal protein S27a
BAribosomal protein uS2none none none
BB40S ribosomal protein S3a
BCribosomal protein uS5none none none
BEribosomal protein eS4none none none
BH40S ribosomal protein S7
BIribosomal protein eS8none none none
BJRibosomal protein S9 (Predicted)
BLRibosomal protein S11
BNribosomal protein uS15
BVribosomal protein eS21none none none
BWRibosomal protein S15a
BYribosomal protein eS24none none none
Baribosomal protein eS26none none none
Beribosomal protein eS30none none none
A35.8S ribosomal RNAnone none none
AARibosomal protein L8
ABribosomal protein uL3none none none
ACribosomal protein uL4none none none
ADribosomal protein uL18none none none
AEribosomal protein eL6none none none
AFribosomal protein uL30none none none
AIRibosomal protein L10 (Predicted)
AJRibosomal protein L11
AMribosomal protein eL14none none none
ANRibosomal protein L15
AOribosomal protein uL13none none none
APribosomal protein uL22none none none
ARribosomal protein eL19none none none
ASribosomal protein eL20none none none
ATribosomal protein eL21
AUribosomal protein eL22none none none
AZ60S ribosomal protein L27
Aaribosomal protein uL15none none none
Abribosomal protein eL29none none none
Adribosomal protein eL31
Aeribosomal protein eL32
Afribosomal protein eL33none none none
Ahribosomal protein uL29none none none
AjRibosomal protein L37
Akribosomal protein eL38none none none
Anribosomal protein eL41none none none
Aoribosomal protein eL42
Atribosomal protein eL28none none none
AKribosomal protein uL10none none none
BcRibosomal protein S28
Bgribosomal protein RACK 1
BG40S ribosomal protein S6
BOribosomal protein uS11none none none
BXRibosomal protein S23
Bbribosomal protein eS27none none none
A45S ribosomal RNAnone none none
AGribosomal protein eL8none none none
AHribosomal protein uL6none none none
ALribosomal protein eL13none none none
AQribosomal protein eL18none none none
AVRibosomal protein L23
AWribosomal protein eL24
AXribosomal protein uL23none none none
AYRibosomal protein L26
Acribosomal protein eL30none none none
BFRibosomal protein S5
Agribosomal protein eL34none none none
Airibosomal protein eL36none none none
Alribosomal protein eL39
Amribosomal protein eL40none none none
BKribosomal protein eS10
Apribosomal protein eL43
AuRibosomal protein
AqRibosomal protein L12
Cteukaryotic elongation factor 2 (eEF2)none none none