6J3Y
Structure of C2S2-type PSII-FCPII supercomplex from diatom
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
KA [auth o] | SCOP2B Superfamily | OMPA barrel-like | 8095677 | 3000208 | SCOP2B (2022-06-29) |
M [auth O] | SCOP2B Superfamily | OMPA barrel-like | 8095677 | 3000208 | SCOP2B (2022-06-29) |
MA [auth u] | SCOP2B Superfamily | PsbU/PolX domain-like | 8094223 | 3000893 | SCOP2B (2022-06-29) |
O [auth U] | SCOP2B Superfamily | PsbU/PolX domain-like | 8094223 | 3000893 | SCOP2B (2022-06-29) |
NA [auth v] | SCOP2B Superfamily | Cytochrome c | 8094925 | 3000815 | SCOP2B (2022-06-29) |
P [auth V] | SCOP2B Superfamily | Cytochrome c | 8094925 | 3000815 | SCOP2B (2022-06-29) |
EA [auth h] | SCOP2 Family | PsbH-like | 8094730 | 4002649 | SCOP2 (2022-06-29) |
EA [auth h] | SCOP2 Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8094731 | 3001547 | SCOP2 (2022-06-29) |
G [auth H] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8094731 | 3001547 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00124 | e6j3yA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
Y [auth a] | PF00124 | e6j3ya1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
HA [auth k] | PF02533 | e6j3yk1 | A: extended segments | X: Photosystem II reaction center protein K, PsbK (From Topology) | H: Photosystem II reaction center protein K, PsbK (From Topology) | T: Photosystem II reaction center protein K, PsbK | F: PF02533 | ECOD (1.6) |
J [auth K] | PF02533 | e6j3yK1 | A: extended segments | X: Photosystem II reaction center protein K, PsbK (From Topology) | H: Photosystem II reaction center protein K, PsbK (From Topology) | T: Photosystem II reaction center protein K, PsbK | F: PF02533 | ECOD (1.6) |
IA [auth l] | PF02419 | e6j3yl1 | A: extended segments | X: Photosystem II reaction center protein L, PsbL (From Topology) | H: Photosystem II reaction center protein L, PsbL (From Topology) | T: Photosystem II reaction center protein L, PsbL | F: PF02419 | ECOD (1.6) |
K [auth L] | PF02419 | e6j3yL1 | A: extended segments | X: Photosystem II reaction center protein L, PsbL (From Topology) | H: Photosystem II reaction center protein L, PsbL (From Topology) | T: Photosystem II reaction center protein L, PsbL | F: PF02419 | ECOD (1.6) |
JA [auth m] | F_UNCLASSIFIED | e6j3ym1 | A: extended segments | X: Photosystem II reaction center protein M, PsbM (From Topology) | H: Photosystem II reaction center protein M, PsbM (From Topology) | T: Photosystem II reaction center protein M, PsbM | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth M] | F_UNCLASSIFIED | e6j3yM1 | A: extended segments | X: Photosystem II reaction center protein M, PsbM (From Topology) | H: Photosystem II reaction center protein M, PsbM (From Topology) | T: Photosystem II reaction center protein M, PsbM | F: F_UNCLASSIFIED | ECOD (1.6) |
KA [auth o] | PF01716 | e6j3yo1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: PF01716 | ECOD (1.6) |
M [auth O] | PF01716 | e6j3yO1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: PF01716 | ECOD (1.6) |
LA [auth t] | PF01405 | e6j3yt1 | A: extended segments | X: Photosystem II reaction center protein T, PsbT (From Topology) | H: Photosystem II reaction center protein T, PsbT (From Topology) | T: Photosystem II reaction center protein T, PsbT | F: PF01405 | ECOD (1.6) |
N [auth T] | PF01405 | e6j3yT1 | A: extended segments | X: Photosystem II reaction center protein T, PsbT (From Topology) | H: Photosystem II reaction center protein T, PsbT (From Topology) | T: Photosystem II reaction center protein T, PsbT | F: PF01405 | ECOD (1.6) |
MA [auth u] | PF06514 | e6j3yu1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF06514 | ECOD (1.6) |
O [auth U] | PF06514 | e6j3yU1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF06514 | ECOD (1.6) |
NA [auth v] | PF14495 | e6j3yv1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF14495 | ECOD (1.6) |
P [auth V] | PF14495 | e6j3yV1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF14495 | ECOD (1.6) |
OA [auth y] | PF05969 | e6j3yy1 | A: extended segments | X: Photosystem II reaction center protein ycf12 (From Topology) | H: Photosystem II reaction center protein ycf12 (From Topology) | T: Photosystem II reaction center protein ycf12 | F: PF05969 | ECOD (1.6) |
Q [auth Y] | PF05969 | e6j3yY1 | A: extended segments | X: Photosystem II reaction center protein ycf12 (From Topology) | H: Photosystem II reaction center protein ycf12 (From Topology) | T: Photosystem II reaction center protein ycf12 | F: PF05969 | ECOD (1.6) |
PA [auth x] | PF06596 | e6j3yx1 | A: extended segments | X: Photosystem II PsbX protein (From Topology) | H: Photosystem II PsbX protein (From Topology) | T: Photosystem II PsbX protein | F: PF06596 | ECOD (1.6) |
R [auth X] | PF06596 | e6j3yX1 | A: extended segments | X: Photosystem II PsbX protein (From Topology) | H: Photosystem II PsbX protein (From Topology) | T: Photosystem II PsbX protein | F: PF06596 | ECOD (1.6) |
QA [auth z] | PF01737 | e6j3yz1 | A: extended segments | X: PsbZ-like (From Topology) | H: PsbZ-like (From Topology) | T: PsbZ-like | F: PF01737 | ECOD (1.6) |
S [auth Z] | PF01737 | e6j3yZ1 | A: extended segments | X: PsbZ-like (From Topology) | H: PsbZ-like (From Topology) | T: PsbZ-like | F: PF01737 | ECOD (1.6) |
B | PF00421 | e6j3yB1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
B | PF00421 | e6j3yB2 | A: a+b two layers | X: Photosystem II antenna protein PsbB insertion domain (From Topology) | H: Photosystem II antenna protein PsbB insertion domain (From Topology) | T: Photosystem II antenna protein PsbB insertion domain | F: PF00421 | ECOD (1.6) |
Z [auth b] | PF00421 | e6j3yb2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
Z [auth b] | PF00421 | e6j3yb1 | A: a+b two layers | X: Photosystem II antenna protein PsbB insertion domain (From Topology) | H: Photosystem II antenna protein PsbB insertion domain (From Topology) | T: Photosystem II antenna protein PsbB insertion domain | F: PF00421 | ECOD (1.6) |
RA [auth q] | F_UNCLASSIFIED | e6j3yq1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Oxygen-evolving enhancer protein 3 (From Topology) | T: Oxygen-evolving enhancer protein 3 | F: F_UNCLASSIFIED | ECOD (1.6) |
T [auth Q] | F_UNCLASSIFIED | e6j3yQ1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Oxygen-evolving enhancer protein 3 (From Topology) | T: Oxygen-evolving enhancer protein 3 | F: F_UNCLASSIFIED | ECOD (1.6) |
SA [auth w] | F_UNCLASSIFIED | e6j3yw1 | A: extended segments | X: Photosystem II reaction center W protein, chloroplastic (From Topology) | H: Photosystem II reaction center W protein, chloroplastic (From Topology) | T: Photosystem II reaction center W protein, chloroplastic | F: F_UNCLASSIFIED | ECOD (1.6) |
AB [auth 31] | PF00504 | e6j3y311 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
BB [auth 32] | PF00504 | e6j3y321 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
CB [auth 33] | PF00504 | e6j3y331 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
DB [auth 34] | PF00504 | e6j3y341 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
WA [auth 11] | PF00504 | e6j3y111 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
XA [auth 12] | PF00504 | e6j3y121 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
YA [auth 13] | PF00504 | e6j3y131 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
ZA [auth 14] | PF00504 | e6j3y141 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
AA [auth c] | PF00421 | e6j3yc1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
C | PF00421 | e6j3yC1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
BA [auth d] | PF00124 | e6j3yd1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
D | PF00124 | e6j3yD1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
CA [auth e] | PF00283,PF00284 | e6j3ye1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: PF00283,PF00284 | ECOD (1.6) |
E | PF00283,PF00284 | e6j3yE1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: PF00283,PF00284 | ECOD (1.6) |
DA [auth f] | PF00283 | e6j3yf1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: PF00283 | ECOD (1.6) |
F | PF00283 | e6j3yF1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: PF00283 | ECOD (1.6) |
EA [auth h] | PF00737 | e6j3yh1 | A: extended segments | X: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | T: Photosystem II 10 kDa phosphoprotein PsbH | F: PF00737 | ECOD (1.6) |
G [auth H] | PF00737 | e6j3yH1 | A: extended segments | X: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | T: Photosystem II 10 kDa phosphoprotein PsbH | F: PF00737 | ECOD (1.6) |
FA [auth i] | PF02532 | e6j3yi1 | A: extended segments | X: Photosystem II reaction center protein I, PsbI (From Topology) | H: Photosystem II reaction center protein I, PsbI (From Topology) | T: Photosystem II reaction center protein I, PsbI | F: PF02532 | ECOD (1.6) |
H [auth I] | PF02532 | e6j3yI1 | A: extended segments | X: Photosystem II reaction center protein I, PsbI (From Topology) | H: Photosystem II reaction center protein I, PsbI (From Topology) | T: Photosystem II reaction center protein I, PsbI | F: PF02532 | ECOD (1.6) |
GA [auth j] | PF01788 | e6j3yj1 | A: extended segments | X: Photosystem II reaction center protein J, PsbJ (From Topology) | H: Photosystem II reaction center protein J, PsbJ (From Topology) | T: Photosystem II reaction center protein J, PsbJ | F: PF01788 | ECOD (1.6) |
I [auth J] | PF01788 | e6j3yJ1 | A: extended segments | X: Photosystem II reaction center protein J, PsbJ (From Topology) | H: Photosystem II reaction center protein J, PsbJ (From Topology) | T: Photosystem II reaction center protein J, PsbJ | F: PF01788 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
KA [auth o], M [auth O] | PF01716 | Manganese-stabilising protein / photosystem II polypeptide (MSP) | Manganese-stabilising protein / photosystem II polypeptide | - | Family |
MA [auth u], O [auth U] | PF06514 | Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU) | Photosystem II 12 kDa extrinsic protein (PsbU) | - | Family |
NA [auth v], P [auth V] | PF14495 | Cytochrome c-550 domain (Cytochrom_C550) | Cytochrome c-550 domain | This domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1]. | Domain |
PA [auth x], R [auth X] | PF06596 | Photosystem II reaction centre X protein (PsbX) (PsbX) | Photosystem II reaction centre X protein (PsbX) | - | Family |
EA [auth h], G [auth H] | PF00737 | Photosystem II 10 kDa phosphoprotein (PsbH) | Photosystem II 10 kDa phosphoprotein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem II |