1LEE

CRYSTAL STRUCTURE OF PLASMEPSIN FROM P. FALCIPARUM IN COMPLEX WITH INHIBITOR RS367


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROPVAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthew coefficientSolvent content
2.6753.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.89α = 90
b = 84.83β = 90
c = 123.08γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90IMAGE PLATEMARRESEARCHmirrors1998-11-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X9BNSLSX9B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.820710.060.0615426322236199.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.9330.190.2233

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1SME1.934.9222291111370.40.2360.286RANDOM26.7
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.944.65-3.71
RMS Deviations
KeyRefinement Restraint Deviation
c_scbond_it29.48
c_dihedral_angle_d27.7
c_scangle_it8.57
c_mcangle_it3.71
c_mcbond_it2.5
c_angle_deg2.2
c_improper_angle_d1.87
c_bond_d0.02
c_angle_deg_prot
c_bond_d_na
RMS Deviations
KeyRefinement Restraint Deviation
c_scbond_it29.48
c_dihedral_angle_d27.7
c_scangle_it8.57
c_mcangle_it3.71
c_mcbond_it2.5
c_angle_deg2.2
c_improper_angle_d1.87
c_bond_d0.02
c_angle_deg_prot
c_bond_d_na
c_dihedral_angle_d_na
c_angle_d_na
c_angle_d_prot
c_improper_angle_d_na
c_improper_angle_d_prot
c_angle_d
c_angle_deg_na
c_bond_d_prot
c_dihedral_angle_d_prot
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2617
Nucleic Acid Atoms
Solvent Atoms338
Heterogen Atoms39

Software

Software
Software NamePurpose
AMoREphasing
CNSrefinement