2JU8
Solution-State Structures of Oleate-Liganded LFABP, Major Form of 1:2 Protein-Ligand Complex
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 13C-filtered NOE | 0.7-1.0 mM [U-99% 13C; U-99% 15N] LFABP, 50 mM sodium phosphate, 0.02 % sodium azide, 5 uM EDTA, 100 % D2O, 3 eq oleate, 100 mM sodium chloride | 100% D2O | |||||
2 | 3D 13C-filtered NOE | 0.7-1.0 mM [U-99% 15N] LFABP, 50 mM sodium phosphate, 0.02 % sodium azide, 5 uM EDTA, 98 % D2O, 3 eq [U-99% 13C] oleate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.15 | 7 | ambient | 303 | |
3 | 3D 13C-filtered NOE | 0.7-1.0 mM [U-99% 13C; U-99% 15N] LFABP, 50 mM sodium phosphate, 0.02 % sodium azide, 5 uM EDTA, 5 % D2O, 3 eq oleate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.15 | 7 | ambient | 303 | |
4 | 3D 13C-filtered NOE | 0.7-1.0 mM [U-99% 15N] LFABP, 50 mM sodium phosphate, 0.02 % sodium azide, 5 uM EDTA, 98 % D2O, 3 eq [U-99% 13C] oleate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.15 | 7 | ambient | 303 | |
5 | 2D 1H-13C HSQC | 0.7-1.0 mM [U-99% 15N] LFABP, 50 mM sodium phosphate, 0.02 % sodium azide, 5 uM EDTA, 98 % D2O, 3 eq [U-99% 13C] oleate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.15 | 7 | ambient | 303 | |
6 | 2D 1H-13C HMQC-TOCSY | 0.7-1.0 mM [U-99% 15N] LFABP, 50 mM sodium phosphate, 0.02 % sodium azide, 5 uM EDTA, 98 % D2O, 3 eq [U-99% 13C] oleate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.15 | 7 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, torsion angle dynamics | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | Only intermolecular NOE (filter NOE) Experiments are entered in this entry. Experiments for assignments, other NOE, and J-coupling constants have been deposited with BMRB ID 15434 |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
2 | structure solution | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | data analysis | NMRView | 5 | Johnson, One Moon Scientific |
5 | chemical shift assignment | NMRView | 5 | Johnson, One Moon Scientific |
6 | peak picking | NMRView | 5 | Johnson, One Moon Scientific |
7 | collection | VNMR | 6.1C | Varian |
8 | graphic display | MOLMOL | Koradi, Billeter and Wuthrich | |
9 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
10 | structure analysis | Procheck | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Th | |
11 | refinement | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |