5UCW

Cytochrome P411 P-4 A82L A78V F263L amination catalyst


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP52980.1 M Bis-tris pH 5.0, 13% PEG 3350, 0.2 M NaHCOO, 22 mg/ml protein
Crystal Properties
Matthew coefficientSolvent content
2.2845.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 123.864α = 90
b = 126.956β = 90
c = 62.567γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2016-06-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.9795SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.74099.8123.913.4108841
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.731000.5931.313.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4WG21.740103324540099.630.190940.189190.22324RANDOM42.19
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.5-0.08-0.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.919
r_dihedral_angle_4_deg18.734
r_dihedral_angle_3_deg13.8
r_dihedral_angle_1_deg6.617
r_long_range_B_refined6.3
r_long_range_B_other6.276
r_scangle_other4.494
r_mcangle_other3.279
r_mcangle_it3.279
r_scbond_it3.167
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.919
r_dihedral_angle_4_deg18.734
r_dihedral_angle_3_deg13.8
r_dihedral_angle_1_deg6.617
r_long_range_B_refined6.3
r_long_range_B_other6.276
r_scangle_other4.494
r_mcangle_other3.279
r_mcangle_it3.279
r_scbond_it3.167
r_scbond_other3.166
r_mcbond_other2.515
r_mcbond_it2.515
r_angle_refined_deg1.437
r_angle_other_deg0.778
r_chiral_restr0.114
r_gen_planes_refined0.016
r_bond_refined_d0.012
r_gen_planes_other0.005
r_bond_other_d0.001
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_scangle_it
r_metal_ion_refined
r_metal_ion_other
r_sphericity_bonded
r_rigid_bond_restr
r_sphericity_free
r_symmetry_vdw_refined
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7152
Nucleic Acid Atoms
Solvent Atoms377
Heterogen Atoms86

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing