6JBS

Bifunctional xylosidase/glucosidase LXYL


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP289.1515% PEG 3350, 0.1M Hepes pH 7.5, 0.2% MgCl2
Crystal Properties
Matthews coefficientSolvent content
2.5451.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 131.913α = 90
b = 131.913β = 90
c = 385.937γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2012-10-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.97925SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.45099.660.15523.612.8126287
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.4998.61

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.450126287687299.70.1880.1840.251RANDOM34.18
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.16-0.160.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.32
r_dihedral_angle_4_deg18.841
r_dihedral_angle_3_deg15.055
r_dihedral_angle_1_deg6.587
r_long_range_B_refined5.007
r_long_range_B_other4.758
r_scangle_other2.467
r_mcangle_other2.21
r_mcangle_it2.209
r_scbond_it1.541
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.32
r_dihedral_angle_4_deg18.841
r_dihedral_angle_3_deg15.055
r_dihedral_angle_1_deg6.587
r_long_range_B_refined5.007
r_long_range_B_other4.758
r_scangle_other2.467
r_mcangle_other2.21
r_mcangle_it2.209
r_scbond_it1.541
r_scbond_other1.541
r_angle_refined_deg1.527
r_mcbond_it1.392
r_mcbond_other1.39
r_angle_other_deg0.983
r_chiral_restr0.082
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms22981
Nucleic Acid Atoms
Solvent Atoms1544
Heterogen Atoms984

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data scaling
PHASERphasing