6GZ5

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis.

Flis, J.Holm, M.Rundlet, E.J.Loerke, J.Hilal, T.Dabrowski, M.Burger, J.Mielke, T.Blanchard, S.C.Spahn, C.M.T.Budkevich, T.V.

(2018) Cell Rep 25: 2676-2688.e7

  • DOI: https://doi.org/10.1016/j.celrep.2018.11.040
  • Primary Citation of Related Structures:  
    6GZ3, 6GZ4, 6GZ5

  • PubMed Abstract: 

    Translocation moves the tRNA 2 ⋅mRNA module directionally through the ribosome during the elongation phase of protein synthesis. Although translocation is known to entail large conformational changes within both the ribosome and tRNA substrates, the orchestrated events that ensure the speed and fidelity of this critical aspect of the protein synthesis mechanism have not been fully elucidated. Here, we present three high-resolution structures of intermediates of translocation on the mammalian ribosome where, in contrast to bacteria, ribosomal complexes containing the translocase eEF2 and the complete tRNA 2 ⋅mRNA module are trapped by the non-hydrolyzable GTP analog GMPPNP. Consistent with the observed structures, single-molecule imaging revealed that GTP hydrolysis principally facilitates rate-limiting, final steps of translocation, which are required for factor dissociation and which are differentially regulated in bacterial and mammalian systems by the rates of deacyl-tRNA dissociation from the E site.


  • Organizational Affiliation

    Institut für Medizinische Physik und Biophysik, Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany.


Macromolecules

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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS3F [auth BD]220Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS7G [auth BF]190Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS10H [auth BK]98Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS12I [auth BM]120Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS19J [auth BP]120Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS9K [auth BQ]139Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS17L [auth BR]125Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS13M [auth BS]139Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS19N [auth BT]143Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS10O [auth BU]97Oryctolagus cuniculusMutation(s): 0 
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MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS25P [auth BZ]86Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS28Q [auth Bc]62Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS14R [auth Bd]51Zindervirus SP6Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS31S [auth Bf]73Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 20
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ribosomal protein RACK 1T [auth Bg]314Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS2U [auth BA]215Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS1V [auth BB]212Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS5W [auth BC]222Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS4X [auth BE]257Oryctolagus cuniculusMutation(s): 0 
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MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS6Y [auth BG]232Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS7Z [auth BH]183Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS8AA [auth BI]207Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS4BA [auth BJ]179Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS17CA [auth BL]153Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS15DA [auth BN]149Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS11EA [auth BO]136Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS21FA [auth BV]81Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS8GA [auth BW]129Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uS12HA [auth BX]141Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS24IA [auth BY]125Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS26JA [auth Ba]97Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS27KA [auth Bb]80Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eS30LA [auth Be]55Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL2OA [auth AA]252Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL3PA [auth AB]394Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL4QA [auth AC]363Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL18RA [auth AD]294Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL6SA [auth AE]194Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL30TA [auth AF]234Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL8UA [auth AG]234Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL6VA [auth AH]191Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL16WA [auth AI]208Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL5XA [auth AJ]169Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL13YA [auth AL]205Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL14ZA [auth AM]139Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL15AB [auth AN]203Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL13BB [auth AO]195Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL22CB [auth AP]153Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL18DB [auth AQ]187Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL19EB [auth AR]181Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL20FB [auth AS]175Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL21GB [auth AT]157Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 60
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ribosomal protein eL22HB [auth AU]99Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL14IB [auth AV]129Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL24JB [auth AW]121Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL23KB [auth AX]117Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL24LB [auth AY]127Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL27MB [auth AZ]134Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL15NB [auth Aa]147Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL29OB [auth Ab]68Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL30PB [auth Ac]103Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL31QB [auth Ad]106Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL32RB [auth Ae]129Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL33SB [auth Af]109Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL34TB [auth Ag]114Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL29UB [auth Ah]122Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL36VB [auth Ai]97Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL37WB [auth Aj]84Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL38XB [auth Ak]69Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL39YB [auth Al]50Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL40ZB [auth Am]50Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL41AC [auth An]25Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL42BC [auth Ao]105Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL43CC [auth Ap]91Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 82
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein eL28DC [auth At]122Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL1EC [auth Au]217Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 84
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL11FC [auth Aq]151Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 85
MoleculeChains Sequence LengthOrganismDetailsImage
ribosomal protein uL10GC [auth AK]202Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 86
MoleculeChains Sequence LengthOrganismDetailsImage
eukaryotic elongation factor 2 (eEF2)HC [auth Ct]853Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 1
MoleculeChains LengthOrganismImage
28S ribosomal RNAA [auth A2]3,612Oryctolagus cuniculus
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Entity ID: 2
MoleculeChains LengthOrganismImage
P/P-site-tRNAB [auth Bv]76Oryctolagus cuniculus
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Entity ID: 3
MoleculeChains LengthOrganismImage
mRNAC [auth Bx]11Zindervirus SP6
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Entity ID: 4
MoleculeChains LengthOrganismImage
E/E-site-tRNAD [auth Bw]76Saccharomyces cerevisiae
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Entity ID: 5
MoleculeChains LengthOrganismImage
18S ribosomal RNAE [auth B1]1,708Oryctolagus cuniculus
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Entity ID: 39
MoleculeChains LengthOrganismImage
5.8S ribosomal RNAMA [auth A3]157Oryctolagus cuniculus
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Entity ID: 40
MoleculeChains LengthOrganismImage
5S ribosomal RNANA [auth A4]119Oryctolagus cuniculus
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GNP
Query on GNP

Download Ideal Coordinates CCD File 
CP [auth Ct]PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
AO [auth Bd],
AP [auth Ao],
BP [auth Ap],
CO [auth Ba],
YO [auth Aj]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
AD [auth A2]
AE [auth A2]
AF [auth A2]
AG [auth A2]
AH [auth A2]
AD [auth A2],
AE [auth A2],
AF [auth A2],
AG [auth A2],
AH [auth A2],
AI [auth A2],
AJ [auth A2],
AK [auth A2],
AL [auth A2],
AM [auth B1],
AN [auth B1],
BD [auth A2],
BE [auth A2],
BF [auth A2],
BG [auth A2],
BH [auth A2],
BI [auth A2],
BJ [auth A2],
BK [auth A2],
BL [auth A2],
BM [auth B1],
BN [auth B1],
BO [auth Ba],
CD [auth A2],
CE [auth A2],
CF [auth A2],
CG [auth A2],
CH [auth A2],
CI [auth A2],
CJ [auth A2],
CK [auth A2],
CL [auth A2],
CM [auth B1],
CN [auth B1],
DD [auth A2],
DE [auth A2],
DF [auth A2],
DG [auth A2],
DH [auth A2],
DI [auth A2],
DJ [auth A2],
DK [auth A2],
DL [auth Bx],
DM [auth B1],
DN [auth B1],
DO [auth A3],
ED [auth A2],
EE [auth A2],
EF [auth A2],
EG [auth A2],
EH [auth A2],
EI [auth A2],
EJ [auth A2],
EK [auth A2],
EL [auth B1],
EM [auth B1],
EN [auth B1],
EO [auth A3],
FD [auth A2],
FE [auth A2],
FF [auth A2],
FG [auth A2],
FH [auth A2],
FI [auth A2],
FJ [auth A2],
FK [auth A2],
FL [auth B1],
FM [auth B1],
FN [auth B1],
FO [auth A3],
GD [auth A2],
GE [auth A2],
GF [auth A2],
GG [auth A2],
GH [auth A2],
GI [auth A2],
GJ [auth A2],
GK [auth A2],
GL [auth B1],
GM [auth B1],
GN [auth B1],
GO [auth A3],
HD [auth A2],
HE [auth A2],
HF [auth A2],
HG [auth A2],
HH [auth A2],
HI [auth A2],
HJ [auth A2],
HK [auth A2],
HL [auth B1],
HM [auth B1],
HN [auth B1],
HO [auth A3],
IC [auth A2],
ID [auth A2],
IE [auth A2],
IF [auth A2],
IG [auth A2],
IH [auth A2],
II [auth A2],
IJ [auth A2],
IK [auth A2],
IL [auth B1],
IM [auth B1],
IN [auth B1],
IO [auth A3],
JC [auth A2],
JD [auth A2],
JE [auth A2],
JF [auth A2],
JG [auth A2],
JH [auth A2],
JI [auth A2],
JJ [auth A2],
JK [auth A2],
JL [auth B1],
JM [auth B1],
JN [auth B1],
JO [auth A3],
KC [auth A2],
KD [auth A2],
KE [auth A2],
KF [auth A2],
KG [auth A2],
KH [auth A2],
KI [auth A2],
KJ [auth A2],
KK [auth A2],
KL [auth B1],
KM [auth B1],
KN [auth B1],
KO [auth A4],
LC [auth A2],
LD [auth A2],
LE [auth A2],
LF [auth A2],
LG [auth A2],
LH [auth A2],
LI [auth A2],
LJ [auth A2],
LK [auth A2],
LL [auth B1],
LM [auth B1],
LN [auth B1],
LO [auth A4],
MC [auth A2],
MD [auth A2],
ME [auth A2],
MF [auth A2],
MG [auth A2],
MH [auth A2],
MI [auth A2],
MJ [auth A2],
MK [auth A2],
ML [auth B1],
MM [auth B1],
MN [auth B1],
MO [auth A4],
NC [auth A2],
ND [auth A2],
NE [auth A2],
NF [auth A2],
NG [auth A2],
NH [auth A2],
NI [auth A2],
NJ [auth A2],
NK [auth A2],
NL [auth B1],
NM [auth B1],
NN [auth B1],
NO [auth A4],
OC [auth A2],
OD [auth A2],
OE [auth A2],
OF [auth A2],
OG [auth A2],
OH [auth A2],
OI [auth A2],
OJ [auth A2],
OK [auth A2],
OL [auth B1],
OM [auth B1],
ON [auth B1],
OO [auth A4],
PC [auth A2],
PD [auth A2],
PE [auth A2],
PF [auth A2],
PG [auth A2],
PH [auth A2],
PI [auth A2],
PJ [auth A2],
PK [auth A2],
PL [auth B1],
PM [auth B1],
PN [auth B1],
PO [auth A4],
QC [auth A2],
QD [auth A2],
QE [auth A2],
QF [auth A2],
QG [auth A2],
QH [auth A2],
QI [auth A2],
QJ [auth A2],
QK [auth A2],
QL [auth B1],
QM [auth B1],
QN [auth B1],
QO [auth A4],
RC [auth A2],
RD [auth A2],
RE [auth A2],
RF [auth A2],
RG [auth A2],
RH [auth A2],
RI [auth A2],
RJ [auth A2],
RK [auth A2],
RL [auth B1],
RM [auth B1],
RN [auth B1],
RO [auth A4],
SC [auth A2],
SD [auth A2],
SE [auth A2],
SF [auth A2],
SG [auth A2],
SH [auth A2],
SI [auth A2],
SJ [auth A2],
SK [auth A2],
SL [auth B1],
SM [auth B1],
SN [auth B1],
SO [auth AA],
TC [auth A2],
TD [auth A2],
TE [auth A2],
TF [auth A2],
TG [auth A2],
TH [auth A2],
TI [auth A2],
TJ [auth A2],
TK [auth A2],
TL [auth B1],
TM [auth B1],
TN [auth B1],
TO [auth AC],
UC [auth A2],
UD [auth A2],
UE [auth A2],
UF [auth A2],
UG [auth A2],
UH [auth A2],
UI [auth A2],
UJ [auth A2],
UK [auth A2],
UL [auth B1],
UM [auth B1],
UN [auth B1],
UO [auth AL],
VC [auth A2],
VD [auth A2],
VE [auth A2],
VF [auth A2],
VG [auth A2],
VH [auth A2],
VI [auth A2],
VJ [auth A2],
VK [auth A2],
VL [auth B1],
VM [auth B1],
VN [auth B1],
VO [auth AO],
WC [auth A2],
WD [auth A2],
WE [auth A2],
WF [auth A2],
WG [auth A2],
WH [auth A2],
WI [auth A2],
WJ [auth A2],
WK [auth A2],
WL [auth B1],
WM [auth B1],
WN [auth B1],
WO [auth AP],
XC [auth A2],
XD [auth A2],
XE [auth A2],
XF [auth A2],
XG [auth A2],
XH [auth A2],
XI [auth A2],
XJ [auth A2],
XK [auth A2],
XL [auth B1],
XM [auth B1],
XN [auth B1],
XO [auth AY],
YC [auth A2],
YD [auth A2],
YE [auth A2],
YF [auth A2],
YG [auth A2],
YH [auth A2],
YI [auth A2],
YJ [auth A2],
YK [auth A2],
YL [auth B1],
YM [auth B1],
YN [auth B1],
ZC [auth A2],
ZD [auth A2],
ZE [auth A2],
ZF [auth A2],
ZG [auth A2],
ZH [auth A2],
ZI [auth A2],
ZJ [auth A2],
ZK [auth A2],
ZL [auth B1],
ZM [auth B1],
ZN [auth BD],
ZO [auth An]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
DDE
Query on DDE
HC [auth Ct]L-PEPTIDE LINKINGC13 H24 N5 O3HIS
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONSPIDER

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyDFG SFB 740
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM079238
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32 GM115327-Tan

Revision History  (Full details and data files)

  • Version 1.0: 2018-12-05
    Type: Initial release
  • Version 1.1: 2018-12-19
    Changes: Data collection, Database references
  • Version 1.2: 2022-03-30
    Changes: Author supporting evidence, Database references, Derived calculations