6ABD

Structure of influenza D virus polymerase bound to vRNA promoter in Mode A conformation(Class A2)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.3 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural insight into RNA synthesis by influenza D polymerase

Peng, Q.Liu, Y.Peng, R.Wang, M.Yang, W.Song, H.Chen, Y.Liu, S.Han, M.Zhang, X.Wang, P.Yan, J.Zhang, B.Qi, J.Deng, T.Gao, G.F.Shi, Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polymerase 3
A
710Influenza D virusMutation(s): 0 
Gene Names: P3
Find proteins for K9LHJ4 (Influenza D virus)
Go to UniProtKB:  K9LHJ4
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
RNA-directed RNA polymerase catalytic subunit
B
753Influenza D virusMutation(s): 0 
Gene Names: PB1
EC: 2.7.7.48
Find proteins for K9LH03 (Influenza D virus)
Go to UniProtKB:  K9LH03
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Polymerase PB2
C
772Influenza D virusMutation(s): 0 
Gene Names: PB2
Find proteins for K9LHF3 (Influenza D virus)
Go to UniProtKB:  K9LHF3
Entity ID: 4
MoleculeChainsLengthOrganism
RNA (5'-R(P*CP*UP*CP*CP*UP*GP*CP*UP*UP*AP*UP*GP*CP*U)-3')R14synthetic construct
Entity ID: 5
MoleculeChainsLengthOrganism
RNA (5'-R(P*AP*GP*CP*AP*GP*UP*AP*GP*CP*AP*AP*GP*GP*AP*G)-3')V15synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.3 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaXDB08020100

Revision History 

  • Version 1.0: 2019-06-12
    Type: Initial release