1XBP

Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
D [auth B]d1xbpb1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
E [auth C]d1xbpc1 Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
G [auth E]d1xbpe1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
I [auth G]d1xbpg1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
I [auth G]d1xbpg2 Alpha and beta proteins (a+b) Ribosomal L11/L12e N-terminal domain Ribosomal L11/L12e N-terminal domain Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, N-terminal domain (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
J [auth H]d1xbph1 Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
N [auth L]d1xbpl1 Alpha and beta proteins (a+b) Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
O [auth M]d1xbpm1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
P [auth N]d1xbpn1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal protein L19 Ribosomal protein L19 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
Q [auth O]d1xbpo1 All alpha proteins PABP domain-like Ribosomal protein L20 Ribosomal protein L20 Ribosomal protein L20 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
R [auth P]d1xbpp1 All beta proteins L21p-like L21p-like Ribosomal protein L21p Ribosomal protein L21p (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
T [auth R]d1xbpr1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
V [auth T]d1xbpt1 All beta proteins Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein TL5 (general stress protein CTC) (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
Y [auth X]d1xbpx1 Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Prokaryotic ribosomal protein L30 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
AA [auth Z]d1xbpz1 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L32p Ribosomal protein L32p (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
BA [auth 1]d1xbp11 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L33p Ribosomal protein L33p (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
CA [auth 2]d1xbp21 Peptides Ribosomal protein L34p Ribosomal protein L34p Ribosomal protein L34p Ribosomal protein L34p (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
K [auth I]d1xbpi1 All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
L [auth J]d1xbpj1 Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
S [auth Q]d1xbpq1 Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
U [auth S]d1xbps1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
W [auth U]d1xbpu1 All beta proteins Barrel-sandwich hybrid Ribosomal L27 protein-like Ribosomal L27 protein Ribosomal protein L27 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
X [auth W]d1xbpw1 All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
C [auth A]d1xbpa1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
C [auth A]d1xbpa2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
DA [auth 3]d1xbp31 Alpha and beta proteins (a+b) L35p-like L35p-like Ribosomal protein L35p Ribosomal protein L35p (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
EA [auth 4]d1xbp41 Small proteins Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)
F [auth D]d1xbpd1 Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 (Deinococcus radiodurans ) [TaxId: 1299 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth B]SCOP2B SuperfamilyTranslational proteins8038543 3000811 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyRibosomal protein L48038546 3001146 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyRibosomal protein L68038556 3000724 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyRibosomal protein L68038552 3000724 SCOP2B (2022-06-29)
I [auth G]SCOP2 FamilyRibosomal protein L11 C-terminal domain8021022 4000731 SCOP2 (2022-06-29)
I [auth G]SCOP2 FamilyRibosomal L11/L12e N-terminal domain-like8021025 4001161 SCOP2 (2022-06-29)
I [auth G]SCOP2 SuperfamilyRibosomal protein L11 C-terminal domain8033402 3001186 SCOP2 (2022-06-29)
I [auth G]SCOP2 SuperfamilyRibosomal L11/L12e N-terminal domain-like8033405 3000950 SCOP2 (2022-06-29)
J [auth H]SCOP2B SuperfamilyRibosomal protein L138038555 3001134 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyRibosomal protein L16p/L10e8038562 3000884 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyProkaryotic ribosomal protein L178038564 3000995 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilyTranslational machinery components8038566 3000571 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8038569 3000334 SCOP2B (2022-06-29)
Q [auth O]SCOP2B SuperfamilyRibosomal protein L208038571 3000563 SCOP2B (2022-06-29)
R [auth P]SCOP2B Superfamilyl21p-like8038572 3002005 SCOP2B (2022-06-29)
T [auth R]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8038577 3000210 SCOP2B (2022-06-29)
V [auth T]SCOP2B SuperfamilyRibosomal protein L25-like8038580 3001161 SCOP2B (2022-06-29)
Y [auth X]SCOP2B SuperfamilyRibosomal protein L30p/L7e8038590 3001378 SCOP2B (2022-06-29)
Z [auth Y]SCOP2B SuperfamilyL28p-like8086128 3001966 SCOP2B (2022-06-29)
AA [auth Z]SCOP2B SuperfamilyZn-binding ribosomal proteins8038593 3001320 SCOP2B (2022-06-29)
BA [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins8038526 3001320 SCOP2B (2022-06-29)
K [auth I]SCOP2B Superfamily50S Ribosomal protein L14-like8038558 3000433 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8038561 3001045 SCOP2B (2022-06-29)
S [auth Q]SCOP2B SuperfamilyRibosomal protein L228038576 3001078 SCOP2B (2022-06-29)
U [auth S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8038578 3000334 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyRibosomal L27 protein-like8038582 3000539 SCOP2B (2022-06-29)
X [auth W]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8038586 3000713 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8038534 3000334 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyNucleic acid-binding proteins8038538 3000135 SCOP2B (2022-06-29)
DA [auth 3]SCOP2B SuperfamilyL35p-like8038530 3000790 SCOP2B (2022-06-29)
EA [auth 4]SCOP2B SuperfamilyRibosomal protein L368038532 3001346 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyRL5-like8038549 3001709 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyL9 N-domain-like8070571 3000338 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth B]Ribosomal_L3e1xbpB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
E [auth C]Ribosomal_L4e1xbpC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
G [auth E]Ribosomal_L6e1xbpE1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
G [auth E]Ribosomal_L6_1e1xbpE2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
I [auth G]Ribosomal_L11e1xbpG1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
I [auth G]Ribosomal_L11_Ne1xbpG2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
J [auth H]Ribosomal_L13e1xbpH1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
M [auth K]Ribosomal_L16e1xbpK1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
N [auth L]Ribosomal_L17_1e1xbpL1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
O [auth M]Ribosomal_L18pe1xbpM1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
P [auth N]Ribosomal_L19e1xbpN1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
Q [auth O]Ribosomal_L20e1xbpO1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
R [auth P]Ribosomal_L21pe1xbpP1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
T [auth R]Ribosomal_L23_2e1xbpR1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
V [auth T]Ribosomal_L25pe1xbpT1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
V [auth T]Ribosomal_TL5_C_1e1xbpT2 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology)T: Ribosomal protein TL5/L25 C-terminal domain-relatedF: Ribosomal_TL5_C_1ECOD (1.6)
Y [auth X]Ribosomal_L30e1xbpX1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
Z [auth Y]Ribosomal_L31e1xbpY1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
AA [auth Z]Ribosomal_L32pe1xbpZ1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
BA [auth 1]Ribosomal_L33e1xbp11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
CA [auth 2]Ribosomal_L34e1xbp21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
K [auth I]Ribosomal_L14e1xbpI1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
L [auth J]Ribosomal_L27Ae1xbpJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
S [auth Q]Ribosomal_L22e1xbpQ1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
U [auth S]ribosomal_L24_1e1xbpS1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
W [auth U]Ribosomal_L27e1xbpU1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
X [auth W]Ribosomal_L29e1xbpW1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
C [auth A]Ribosomal_L2_1e1xbpA4 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
C [auth A]Ribosomal_L2_Ce1xbpA3 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
DA [auth 3]Ribosomal_L35pe1xbp31 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
EA [auth 4]Ribosomal_L36e1xbp41 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
F [auth D]Ribosomal_L5_Ce1xbpD1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
H [auth F]Ribosomal_L9_Ne1xbpF1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
E [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
G [auth E]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
I [auth G]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
I [auth G]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
J [auth H]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
M [auth K]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
N [auth L]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
O [auth M]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
P [auth N]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
Q [auth O]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
R [auth P]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
T [auth R]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
V [auth T]PF14693Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C)Ribosomal protein TL5, C-terminal domainThis family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ...This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown.
Domain
V [auth T]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
Y [auth X]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
Z [auth Y]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
AA [auth Z]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
BA [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
CA [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
K [auth I]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
L [auth J]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
S [auth Q]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
U [auth S]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
U [auth S]PF00467KOW motif (KOW)KOW motif- Family
W [auth U]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
X [auth W]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
C [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
C [auth A]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
DA [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
EA [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
F [auth D]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
F [auth D]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
H [auth F]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth 9]5S RIBOSOMAL RNA---
D [auth B]50S ribosomal protein L3
E [auth C]50S ribosomal protein L4
G [auth E]50S ribosomal protein L6
I [auth G]50S ribosomal protein L11
J [auth H]50S ribosomal protein L13
M [auth K]ribosomal protein L16
N [auth L]50S ribosomal protein L17
O [auth M]50S ribosomal protein L18
P [auth N]50S ribosomal protein L19
Q [auth O]50S ribosomal protein L20
R [auth P]50S ribosomal protein L21
T [auth R]50S ribosomal protein L23
V [auth T]50S ribosomal protein L25
Y [auth X]50S ribosomal protein L30
Z [auth Y]50S ribosomal protein L31
AA [auth Z]50S ribosomal protein L32
BA [auth 1]50S ribosomal protein L33
CA [auth 2]50S ribosomal protein L34
A [auth 0]23S RIBOSOMAL RNA---
K [auth I]50S ribosomal protein L14
L [auth J]50S ribosomal protein L15
S [auth Q]50S ribosomal protein L22
U [auth S]50S ribosomal protein L24
W [auth U]50S ribosomal protein L27
X [auth W]50S ribosomal protein L29
C [auth A]50S ribosomal protein L2
DA [auth 3]50S ribosomal protein L35
EA [auth 4]50S ribosomal protein L36
F [auth D]50S ribosomal protein L5
H [auth F]50S ribosomal protein L9

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
D [auth B]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
D [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth B]IPR000597Large ribosomal subunit protein uL3Family
E [auth C]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth C]IPR002136Large ribosomal subunit protein uL4Family
E [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
G [auth E]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
G [auth E]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
G [auth E]IPR000702Large ribosomal subunit protein uL6-likeFamily
G [auth E]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
I [auth G]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
I [auth G]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
I [auth G]IPR000911Ribosomal protein uL11Family
I [auth G]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
I [auth G]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
I [auth G]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
I [auth G]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
J [auth H]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
J [auth H]IPR005822Large ribosomal subunit protein uL13Family
J [auth H]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
J [auth H]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
M [auth K]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
M [auth K]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
M [auth K]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
M [auth K]IPR016180Large ribosomal subunit protein uL16 domainDomain
M [auth K]IPR047873Large ribosomal subunit protein uL16Family
N [auth L]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
N [auth L]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
N [auth L]IPR000456Large ribosomal subunit protein bL17Family
O [auth M]IPR005484Large ribosomal subunit protein uL18Family
O [auth M]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
P [auth N]IPR001857Large ribosomal subunit protein bL19Family
P [auth N]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
P [auth N]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
P [auth N]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth O]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
Q [auth O]IPR005813Large ribosomal subunit protein bL20Family
R [auth P]IPR028909Large ribosomal subunit protein bL21-likeFamily
R [auth P]IPR001787Large ribosomal subunit protein bL21Family
R [auth P]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
T [auth R]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
T [auth R]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
T [auth R]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
T [auth R]IPR013025Large ribosomal subunit protein uL23-likeFamily
V [auth T]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
V [auth T]IPR001021Ribosomal protein bL25, long-formFamily
V [auth T]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
V [auth T]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
V [auth T]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
V [auth T]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
Y [auth X]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Y [auth X]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
Y [auth X]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Z [auth Y]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
Z [auth Y]IPR027491Large ribosomal subunit protein bL31 type AFamily
Z [auth Y]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
Z [auth Y]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
AA [auth Z]IPR002677Large ribosomal subunit protein bL32Family
AA [auth Z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth Z]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
BA [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
BA [auth 1]IPR001705Large ribosomal subunit protein bL33Family
BA [auth 1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
CA [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
CA [auth 2]IPR000271Large ribosomal subunit protein bL34Family
K [auth I]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
K [auth I]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
K [auth I]IPR000218Large ribosomal subunit protein uL14Family
K [auth I]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
L [auth J]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
L [auth J]IPR021131Large ribosomal subunit protein uL15/eL18Domain
L [auth J]IPR030878Large ribosomal subunit protein uL15Family
L [auth J]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
L [auth J]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
S [auth Q]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
S [auth Q]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth Q]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth Q]IPR001063Large ribosomal subunit protein uL22Family
S [auth Q]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
U [auth S]IPR003256Large ribosomal subunit protein uL24Family
U [auth S]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
U [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
U [auth S]IPR005824KOWDomain
U [auth S]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth S]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
W [auth U]IPR001684Large ribosomal subunit protein bL27Family
W [auth U]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
X [auth W]IPR001854Large ribosomal subunit protein uL29Family
X [auth W]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
X [auth W]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
C [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth A]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth A]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
C [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth A]IPR002171Large ribosomal subunit protein uL2Family
DA [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
DA [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
DA [auth 3]IPR001706Large ribosomal subunit protein bL35Family
DA [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
EA [auth 4]IPR000473Large ribosomal subunit protein bL36Family
EA [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
F [auth D]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
F [auth D]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
F [auth D]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
F [auth D]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
F [auth D]IPR002132Large ribosomal subunit protein uL5Family
H [auth F]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
H [auth F]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
H [auth F]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
H [auth F]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
H [auth F]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
H [auth F]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
H [auth F]IPR000244Large ribosomal subunit protein bL9Family