2VGY | pdb_00002vgy

Crystal structure of the Yersinia enterocolitica Type III Secretion Translocator Chaperone SycD (alternative dimer)

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ATPR_3e2vgyA1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_3ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.25.40.10 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat Tetratricopeptide repeat domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07720Tetratricopeptide repeat (TPR_3)Tetratricopeptide repeat- Repeat

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005415Type III secretion system, low calcium response, chaperone LcrH/SycDFamily
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR016379Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroupFamily
IPR011716Tetratricopeptide TPR-3Repeat

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
MLY Parent Component: LYS

RESID:  AA0075

PSI-MOD :  N6,N6-dimethyl-L-lysine MOD:00084