RNA polymerase alpha C-terminal domain (E. coli) and sigma region 4 (T. aq. mutant) bound to (UP,-35 element) DNA
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2B Superfamily | Sigma factor domain-like | 8040679 | 3000953 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | Sigma factor domain-like | 8040679 | 3000953 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | C-terminal domain of RNA polymerase alpha subunit | 8042964 | 3000519 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | C-terminal domain of RNA polymerase alpha subunit | 8042964 | 3000519 | SCOP2B (2022-06-29) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | PF04545 | e3n97A1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF04545 | ECOD (1.6) |
B [auth D] | PF04545 | e3n97D1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF04545 | ECOD (1.6) |
C [auth B] | PF03118 | e3n97B1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF03118 | ECOD (1.6) |
D [auth C] | PF03118 | e3n97C1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF03118 | ECOD (1.6) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
A, B [auth D] | RNA polymerase sigma factor | | | |
C [auth B], D [auth C] | DNA-directed RNA polymerase subunit alpha | | | |
E [auth M] | DNA (5'-D(*TP*GP*GP*AP*AP*AP*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*CP*AP*TP*GP*G)-3') | - | - | - |
F [auth N] | DNA (5'-D(*CP*CP*AP*TP*GP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP*TP*TP*TP*CP*C)-3') | - | - | - |
Chains | Accession | Name | Type |
---|
A, B [auth D] | IPR007627 | RNA polymerase sigma-70 region 2 | Domain |
A, B [auth D] | IPR000943 | RNA polymerase sigma-70 | Domain |
A, B [auth D] | IPR013325 | RNA polymerase sigma factor, region 2 | Homologous Superfamily |
A, B [auth D] | IPR013324 | RNA polymerase sigma factor, region 3/4-like | Homologous Superfamily |
A, B [auth D] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
A, B [auth D] | IPR012760 | RNA polymerase sigma factor RpoD, C-terminal | Domain |
A, B [auth D] | IPR009042 | RNA polymerase sigma-70 region 1.2 | Domain |
A, B [auth D] | IPR007630 | RNA polymerase sigma-70 region 4 | Domain |
A, B [auth D] | IPR014284 | RNA polymerase sigma-70-like domain | Domain |
A, B [auth D] | IPR007624 | RNA polymerase sigma-70 region 3 | Domain |
A, B [auth D] | IPR028630 | RNA polymerase sigma factor RpoD | Family |
C [auth B], D [auth C] | IPR011773 | DNA-directed RNA polymerase, alpha subunit | Family |
C [auth B], D [auth C] | IPR011260 | RNA polymerase, alpha subunit, C-terminal | Domain |
C [auth B], D [auth C] | IPR011263 | DNA-directed RNA polymerase, RpoA/D/Rpb3-type | Domain |
C [auth B], D [auth C] | IPR036603 | RNA polymerase, RBP11-like subunit | Homologous Superfamily |
C [auth B], D [auth C] | IPR011262 | DNA-directed RNA polymerase, insert domain | Domain |
C [auth B], D [auth C] | IPR036643 | DNA-directed RNA polymerase, insert domain superfamily | Homologous Superfamily |