4MZH | pdb_00004mzh

Crystal structure of human Spindlin1 bound to histone H3(K4me3-R8me2s) peptide


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyTudor/PWWP/MBT domain-like 8052902 3000404 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyTudor/PWWP/MBT domain-like 8052900 3000404 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyTudor/PWWP/MBT domain-like 8052901 3000404 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASpin-Ssty_1e4mzhA2 A: beta barrelsX: SH3H: SH3T: SH3F: Spin-Ssty_1ECOD (1.6)
ASpin-Ssty_2e4mzhA1 A: beta barrelsX: SH3H: SH3T: SH3F: Spin-Ssty_2ECOD (1.6)
ASpin-Sstye4mzhA3 A: beta barrelsX: SH3H: SH3T: SH3F: Spin-SstyECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.80.10.70 Mainly Beta Trefoil Trefoil (Acidic Fibroblast Growth Factor, subunit A) Spindlin/SstyCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02513Spin/Ssty Family (Spin-Ssty)Spin/Ssty FamilySpindlin (Spin) is a novel maternal transcript present in the unfertilised egg and early embryo [1]. The Y-linked spermiogenesis -specific transcript (Ssty) is also expressed during gametogenesis and forms part of this Pfam family. Members of this f ...Spindlin (Spin) is a novel maternal transcript present in the unfertilised egg and early embryo [1]. The Y-linked spermiogenesis -specific transcript (Ssty) is also expressed during gametogenesis and forms part of this Pfam family. Members of this family contain three copies of this 50 residue repeat. The repeat is predicted to contain four beta strands.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Spindlin-1
Peptide from Histone H3.2

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
2MR Parent Component: ARG

RESIDAA0067

PSI-MOD :  symmetric dimethyl-L-arginine MOD:00076
M3L Parent Component: LYS

RESIDAA0067 , AA0074

PSI-MOD :  symmetric dimethyl-L-arginine MOD:00076 , N6,N6,N6-trimethyl-L-lysine MOD:00083