4WRO

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth 6E]SCOP2B SuperfamilyRibosomal protein S78033523 3000799 SCOP2B (2022-06-29)
N [auth 8E]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8037678 3000100 SCOP2B (2022-06-29)
O [auth 1I]SCOP2B SuperfamilyRibosomal protein S108044019 3001336 SCOP2B (2022-06-29)
P [auth 2I]SCOP2B SuperfamilyTranslational machinery components8044020 3000571 SCOP2B (2022-06-29)
Q [auth 3I]SCOP2B SuperfamilyNucleic acid-binding proteins8044021 3000135 SCOP2B (2022-06-29)
R [auth 4I]SCOP2B SuperfamilyS13-like H2TH domain8003708 3000053 SCOP2B (2022-06-29)
U [auth 7I]SCOP2B SuperfamilyRibosomal protein S168044025 3000680 SCOP2B (2022-06-29)
W [auth 9I]SCOP2B SuperfamilyRibosomal protein S188044028 3001191 SCOP2B (2022-06-29)
X [auth AI]SCOP2B SuperfamilyRibosomal protein S198044027 3000686 SCOP2B (2022-06-29)
Y [auth BI]SCOP2B SuperfamilyRibosomal protein S208044029 3001362 SCOP2B (2022-06-29)
HA [auth 11]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8033194 3000334 SCOP2B (2022-06-29)
HA [auth 11]SCOP2B SuperfamilyNucleic acid-binding proteins8033195 3000135 SCOP2B (2022-06-29)
IA [auth 21]SCOP2B SuperfamilyTranslational proteins8033197 3000811 SCOP2B (2022-06-29)
JA [auth 31]SCOP2B SuperfamilyRibosomal protein L48033198 3001146 SCOP2B (2022-06-29)
MA [auth 61]SCOP2B SuperfamilyL9 N-domain-like8042935 3000338 SCOP2B (2022-06-29)
MA [auth 61]SCOP2B SuperfamilyRibosomal protein L9 C-domain8042934 3000329 SCOP2B (2022-06-29)
NA [auth 58]SCOP2B SuperfamilyRibosomal protein L138033205 3001134 SCOP2B (2022-06-29)
OA [auth 68]SCOP2B Superfamily50S Ribosomal protein L14-like8042936 3000433 SCOP2B (2022-06-29)
PA [auth 78]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8033207 3001045 SCOP2B (2022-06-29)
QA [auth 88]SCOP2B SuperfamilyRibosomal protein L16p/L10e8043627 3000884 SCOP2B (2022-06-29)
RA [auth 98]SCOP2B SuperfamilyProkaryotic ribosomal protein L178032744 3000995 SCOP2B (2022-06-29)
SA [auth A8]SCOP2B SuperfamilyTranslational machinery components8033211 3000571 SCOP2B (2022-06-29)
TA [auth B8]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8033214 3000334 SCOP2B (2022-06-29)
UA [auth C8]SCOP2B SuperfamilyRibosomal protein L208033216 3000563 SCOP2B (2022-06-29)
VA [auth D8]SCOP2B Superfamilyl21p-like8033218 3002005 SCOP2B (2022-06-29)
WA [auth E8]SCOP2B SuperfamilyRibosomal protein L228033220 3001078 SCOP2B (2022-06-29)
XA [auth F8]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8033219 3000210 SCOP2B (2022-06-29)
YA [auth G8]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8033223 3000334 SCOP2B (2022-06-29)
AB [auth I8]SCOP2B SuperfamilyRibosomal L27 protein-like8041210 3000539 SCOP2B (2022-06-29)
BB [auth J8]SCOP2B SuperfamilyL28p-like8042932 3001966 SCOP2B (2022-06-29)
CB [auth K8]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8042933 3000713 SCOP2B (2022-06-29)
EB [auth M8]SCOP2B SuperfamilyL28p-like8033189 3001966 SCOP2B (2022-06-29)
FB [auth N8]SCOP2B SuperfamilyZn-binding ribosomal proteins8033190 3001320 SCOP2B (2022-06-29)
GB [auth O8]SCOP2B SuperfamilyZn-binding ribosomal proteins8033191 3001320 SCOP2B (2022-06-29)
IB [auth Q8]SCOP2B SuperfamilyL35p-like8033192 3000790 SCOP2B (2022-06-29)
G [auth 1E]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8044010 3001397 SCOP2B (2022-06-29)
KB [auth 12]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8044010 3001397 SCOP2B (2022-06-29)
H [auth 2E]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II)8044011 3001043 SCOP2B (2022-06-29)
H [auth 2E]SCOP2B SuperfamilyRibosomal protein S3 C-terminal domain8044012 3001053 SCOP2B (2022-06-29)
LB [auth 22]SCOP2B SuperfamilyRibosomal protein S3 C-terminal domain8044012 3001053 SCOP2B (2022-06-29)
LB [auth 22]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II)8044011 3001043 SCOP2B (2022-06-29)
I [auth 3E]SCOP2B SuperfamilyAlpha-L RNA-binding motif8044014 3001473 SCOP2B (2022-06-29)
MB [auth 32]SCOP2B SuperfamilyAlpha-L RNA-binding motif8044014 3001473 SCOP2B (2022-06-29)
J [auth 4E]SCOP2B SuperfamilydsRNA-binding domain-like8044017 3000985 SCOP2B (2022-06-29)
J [auth 4E]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8044015 3000100 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
K [auth 5E]PF01250e4wro5E1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
L [auth 6E]PF00177e4wro6E1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
M [auth 7E]PF00410e4wro7E2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
M [auth 7E]PF00410e4wro7E1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
N [auth 8E]PF00380e4wro8E1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
O [auth 1I]PF00338e4wro1I1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
P [auth 2I]PF00411e4wro2I1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
Q [auth 3I]PF00164e4wro3I1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
R [auth 4I]PF00416e4wro4I1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
S [auth 5I]PF00253e4wro5I1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
T [auth 6I]PF00312e4wro6I1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
U [auth 7I]PF00886e4wro7I1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
V [auth 8I]PF00366e4wro8I1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
W [auth 9I]PF01084e4wro9I1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
X [auth AI]PF00203e4wroAI1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
Y [auth BI]PF01649e4wroBI1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
HA [auth 11]PF00181e4wro111 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
HA [auth 11]PF03947e4wro112 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
IA [auth 21]PF00297e4wro211 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
JA [auth 31]PF00573e4wro311 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
KA [auth 41]PF00281,PF00673e4wro411 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
LA [auth 51]PF00347e4wro511 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
MA [auth 61]PF01281e4wro612 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
MA [auth 61]PF03948e4wro611 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: PF03948ECOD (1.6)
NA [auth 58]PF00572e4wro581 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
OA [auth 68]PF00238e4wro681 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
PA [auth 78]PF00828e4wro781 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
QA [auth 88]PF00252e4wro881 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
RA [auth 98]PF01196e4wro981 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
SA [auth A8]PF00861e4wroA81 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
TA [auth B8]PF01245e4wroB81 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
UA [auth C8]PF00453e4wroC81 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
VA [auth D8]PF00829e4wroD81 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
WA [auth E8]PF00237e4wroE81 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
XA [auth F8]PF00276e4wroF81 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
YA [auth G8]PF00467,PF17136e4wroG81 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
ZA [auth H8]PF01386e4wroH81 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
ZA [auth H8]PF14693e4wroH82 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology)T: Ribosomal protein TL5/L25 C-terminal domain-relatedF: PF14693ECOD (1.6)
AB [auth I8]PF01016e4wroI81 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
BB [auth J8]PF00830e4wroJ81 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
CB [auth K8]PF00831e4wroK81 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
DB [auth L8]PF00327e4wroL81 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
EB [auth M8]PF01197e4wroM81 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
FB [auth N8]PF01783e4wroN81 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
GB [auth O8]PF00471e4wroO81 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
HB [auth P8]PF00468e4wroP81 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
IB [auth Q8]PF01632e4wroQ81 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
G [auth 1E]PF00318e4wro1E1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
KB [auth 12]PF00318e4wro121 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
H [auth 2E]PF00189e4wro2E2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
H [auth 2E]PF07650e4wro2E1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
LB [auth 22]PF00189e4wro222 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
LB [auth 22]PF07650e4wro221 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
I [auth 3E]PF00163,PF01479e4wro3E1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
MB [auth 32]PF00163,PF01479e4wro321 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
J [auth 4E]PF03719e4wro4E1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
J [auth 4E]PF00333e4wro4E2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth 5E]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
L [auth 6E]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
N [auth 8E]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
O [auth 1I]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
P [auth 2I]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
Q [auth 3I]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
R [auth 4I]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
T [auth 6I]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
U [auth 7I]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
W [auth 9I]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
X [auth AI]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
Y [auth BI]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
Z [auth 1F]PF1707030S ribosomal protein Thx (Thx)30S ribosomal protein Thx- Family
HA [auth 11]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
HA [auth 11]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
IA [auth 21]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
JA [auth 31]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
KA [auth 41]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
KA [auth 41]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
MA [auth 61]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
MA [auth 61]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
NA [auth 58]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
OA [auth 68]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PA [auth 78]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
QA [auth 88]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
RA [auth 98]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
SA [auth A8]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
TA [auth B8]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
UA [auth C8]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
VA [auth D8]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
WA [auth E8]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
XA [auth F8]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
YA [auth G8]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
YA [auth G8]PF00467KOW motif (KOW)KOW motif- Family
ZA [auth H8]PF14693Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C)Ribosomal protein TL5, C-terminal domainThis family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ...This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown.
Domain
ZA [auth H8]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
AB [auth I8]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
BB [auth J8]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
CB [auth K8]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
DB [auth L8]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
EB [auth M8]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
FB [auth N8]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
GB [auth O8]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
HB [auth P8]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
IB [auth Q8]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
G [auth 1E],
KB [auth 12]
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
H [auth 2E],
LB [auth 22]
PF07650KH domain (KH_2)KH domain- Domain
H [auth 2E],
LB [auth 22]
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
I [auth 3E],
MB [auth 32]
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
I [auth 3E],
MB [auth 32]
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
J [auth 4E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
J [auth 4E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 13],
JB [auth 1G]
16S ribosomal RNA---
K [auth 5E]30S ribosomal protein S6
L [auth 6E]30S ribosomal protein S7
M [auth 7E]30S ribosomal protein S8---
N [auth 8E]30S ribosomal protein S9
O [auth 1I]30S ribosomal protein S10
P [auth 2I]30S ribosomal protein S11
Q [auth 3I]30S ribosomal protein S12
R [auth 4I]30S ribosomal protein S13
S [auth 5I]30S ribosomal protein S14 type Z---
T [auth 6I]30S ribosomal protein S15
B [auth 1L],
CA [auth 3K],
D [auth 3L]
tRNA-Phe---
U [auth 7I]30S ribosomal protein S16
V [auth 8I]30S ribosomal protein S17---
W [auth 9I]30S ribosomal protein S18
X [auth AI]30S ribosomal protein S19
Y [auth BI]30S ribosomal protein S20
Z [auth 1F]30S ribosomal protein Thx -
AA [auth 1K]tRNA-Phe---
FA [auth 1J],
GA [auth 16]
5S ribosomal RNA---
HA [auth 11]50S ribosomal protein L2
IA [auth 21]50S ribosomal protein L3
BA [auth 2K],
C [auth 2L]
tRNA-fMet---
JA [auth 31]50S ribosomal protein L4
KA [auth 41]50S ribosomal protein L5
LA [auth 51]50S ribosomal protein L6---
MA [auth 61]50S ribosomal protein L9
NA [auth 58]50S ribosomal protein L13
OA [auth 68]50S ribosomal protein L14
PA [auth 78]50S ribosomal protein L15
QA [auth 88]50S ribosomal protein L16
RA [auth 98]50S ribosomal protein L17
SA [auth A8]50S ribosomal protein L18
DA [auth 4K],
E [auth 4L]
RNA (30-MER)---
TA [auth B8]50S ribosomal protein L19
UA [auth C8]50S ribosomal protein L20
VA [auth D8]50S ribosomal protein L21
WA [auth E8]50S ribosomal protein L22
XA [auth F8]50S ribosomal protein L23
YA [auth G8]50S ribosomal protein L24
ZA [auth H8]50S ribosomal protein L25
AB [auth I8]50S ribosomal protein L27
BB [auth J8]50S ribosomal protein L28
CB [auth K8]50S ribosomal protein L29
EA [auth 1H],
F [auth 14]
23S ribosomal RNA---
DB [auth L8]50S ribosomal protein L30
EB [auth M8]50S ribosomal protein L31
FB [auth N8]50S ribosomal protein L32
GB [auth O8]50S ribosomal protein L33
HB [auth P8]50S ribosomal protein L34
IB [auth Q8]50S ribosomal protein L35
G [auth 1E],
KB [auth 12]
30S ribosomal protein S2
H [auth 2E],
LB [auth 22]
30S ribosomal protein S3
I [auth 3E],
MB [auth 32]
30S ribosomal protein S4
J [auth 4E]30S ribosomal protein S5

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
K [auth 5E]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
K [auth 5E]IPR000529Small ribosomal subunit protein bS6Family
K [auth 5E]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
K [auth 5E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
K [auth 5E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
L [auth 6E]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
L [auth 6E]IPR000235Small ribosomal subunit protein uS7Family
L [auth 6E]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
L [auth 6E]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
L [auth 6E]IPR023798Small ribosomal subunit protein uS7 domainDomain
N [auth 8E]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
N [auth 8E]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
N [auth 8E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
N [auth 8E]IPR000754Small ribosomal subunit protein uS9Family
N [auth 8E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
O [auth 1I]IPR001848Small ribosomal subunit protein uS10Family
O [auth 1I]IPR027486Small ribosomal subunit protein uS10 domainDomain
O [auth 1I]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
O [auth 1I]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
P [auth 2I]IPR001971Small ribosomal subunit protein uS11Family
P [auth 2I]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
P [auth 2I]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
P [auth 2I]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
Q [auth 3I]IPR006032Small ribosomal subunit protein uS12Family
Q [auth 3I]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth 3I]IPR005679Ribosomal protein uS12, bacterial-typeFamily
R [auth 4I]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
R [auth 4I]IPR001892Small ribosomal subunit protein uS13Family
R [auth 4I]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
R [auth 4I]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
R [auth 4I]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
T [auth 6I]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
T [auth 6I]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
T [auth 6I]IPR000589Small ribosomal subunit protein uS15Family
U [auth 7I]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
U [auth 7I]IPR000307Small ribosomal subunit protein bS16Family
W [auth 9I]IPR001648Small ribosomal subunit protein bS18Family
W [auth 9I]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
W [auth 9I]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
X [auth AI]IPR002222Small ribosomal subunit protein uS19Family
X [auth AI]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
X [auth AI]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
X [auth AI]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Y [auth BI]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
Y [auth BI]IPR002583Small ribosomal subunit protein bS20Family
Z [auth 1F]IPR030826Small ribosomal subunit protein bTHX/bTHXc/bTHXmFamily
Z [auth 1F]IPR031414Small ribosomal subunit protein bTHXFamily
HA [auth 11]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
HA [auth 11]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
HA [auth 11]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth 11]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
HA [auth 11]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
HA [auth 11]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HA [auth 11]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
HA [auth 11]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
HA [auth 11]IPR002171Large ribosomal subunit protein uL2Family
IA [auth 21]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IA [auth 21]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IA [auth 21]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IA [auth 21]IPR000597Large ribosomal subunit protein uL3Family
JA [auth 31]IPR013005Large ribosomal subunit protein uL4-likeFamily
JA [auth 31]IPR002136Large ribosomal subunit protein uL4Family
JA [auth 31]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
KA [auth 41]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
KA [auth 41]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
KA [auth 41]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
KA [auth 41]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
KA [auth 41]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
KA [auth 41]IPR002132Large ribosomal subunit protein uL5Family
MA [auth 61]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
MA [auth 61]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
MA [auth 61]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
MA [auth 61]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
MA [auth 61]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
MA [auth 61]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
MA [auth 61]IPR000244Large ribosomal subunit protein bL9Family
NA [auth 58]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
NA [auth 58]IPR005822Large ribosomal subunit protein uL13Family
NA [auth 58]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
NA [auth 58]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
OA [auth 68]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
OA [auth 68]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
OA [auth 68]IPR000218Large ribosomal subunit protein uL14Family
OA [auth 68]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
PA [auth 78]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
PA [auth 78]IPR021131Large ribosomal subunit protein uL15/eL18Domain
PA [auth 78]IPR030878Large ribosomal subunit protein uL15Family
PA [auth 78]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
PA [auth 78]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
QA [auth 88]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
QA [auth 88]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
QA [auth 88]IPR016180Large ribosomal subunit protein uL16 domainDomain
QA [auth 88]IPR047873Large ribosomal subunit protein uL16Family
RA [auth 98]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
RA [auth 98]IPR000456Large ribosomal subunit protein bL17Family
SA [auth A8]IPR005484Large ribosomal subunit protein uL18Family
SA [auth A8]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
TA [auth B8]IPR001857Large ribosomal subunit protein bL19Family
TA [auth B8]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
TA [auth B8]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
TA [auth B8]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
UA [auth C8]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
UA [auth C8]IPR005813Large ribosomal subunit protein bL20Family
VA [auth D8]IPR028909Large ribosomal subunit protein bL21-likeFamily
VA [auth D8]IPR001787Large ribosomal subunit protein bL21Family
VA [auth D8]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
WA [auth E8]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
WA [auth E8]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
WA [auth E8]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
WA [auth E8]IPR001063Large ribosomal subunit protein uL22Family
WA [auth E8]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
XA [auth F8]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
XA [auth F8]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
XA [auth F8]IPR013025Large ribosomal subunit protein uL23-likeFamily
YA [auth G8]IPR003256Large ribosomal subunit protein uL24Family
YA [auth G8]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
YA [auth G8]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
YA [auth G8]IPR005824KOWDomain
YA [auth G8]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
YA [auth G8]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
ZA [auth H8]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
ZA [auth H8]IPR001021Ribosomal protein bL25, long-formFamily
ZA [auth H8]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
ZA [auth H8]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
ZA [auth H8]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
ZA [auth H8]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
AB [auth I8]IPR001684Large ribosomal subunit protein bL27Family
AB [auth I8]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
BB [auth J8]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
BB [auth J8]IPR026569Large ribosomal subunit protein bL28Family
BB [auth J8]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
CB [auth K8]IPR001854Large ribosomal subunit protein uL29Family
CB [auth K8]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
CB [auth K8]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
DB [auth L8]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
DB [auth L8]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
DB [auth L8]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
DB [auth L8]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
EB [auth M8]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
EB [auth M8]IPR027491Large ribosomal subunit protein bL31 type AFamily
EB [auth M8]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
EB [auth M8]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
FB [auth N8]IPR002677Large ribosomal subunit protein bL32Family
FB [auth N8]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FB [auth N8]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
GB [auth O8]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GB [auth O8]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
GB [auth O8]IPR001705Large ribosomal subunit protein bL33Family
GB [auth O8]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
HB [auth P8]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
HB [auth P8]IPR000271Large ribosomal subunit protein bL34Family
IB [auth Q8]IPR021137Large ribosomal subunit protein bL35-likeFamily
IB [auth Q8]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
IB [auth Q8]IPR001706Large ribosomal subunit protein bL35Family
IB [auth Q8]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
G [auth 1E],
KB [auth 12]
IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
G [auth 1E],
KB [auth 12]
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
G [auth 1E],
KB [auth 12]
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
G [auth 1E],
KB [auth 12]
IPR001865Small ribosomal subunit protein uS2Family
H [auth 2E],
LB [auth 22]
IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
H [auth 2E],
LB [auth 22]
IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
H [auth 2E],
LB [auth 22]
IPR004087K Homology domainDomain
H [auth 2E],
LB [auth 22]
IPR004044K Homology domain, type 2Domain
H [auth 2E],
LB [auth 22]
IPR015946K homology domain-like, alpha/betaHomologous Superfamily
H [auth 2E],
LB [auth 22]
IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
H [auth 2E],
LB [auth 22]
IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
H [auth 2E],
LB [auth 22]
IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
I [auth 3E],
MB [auth 32]
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
I [auth 3E],
MB [auth 32]
IPR002942RNA-binding S4 domainDomain
I [auth 3E],
MB [auth 32]
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
I [auth 3E],
MB [auth 32]
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
I [auth 3E],
MB [auth 32]
IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
I [auth 3E],
MB [auth 32]
IPR022801Small ribosomal subunit protein uS4Family
J [auth 4E]IPR000851Small ribosomal subunit protein uS5Family
J [auth 4E]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
J [auth 4E]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
J [auth 4E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
J [auth 4E]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
J [auth 4E]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
J [auth 4E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily