4WRO

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.193 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history. 


Literature

Structural insights into the translational infidelity mechanism.

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

(2015) Nat Commun 6: 7251-7251

  • DOI: https://doi.org/10.1038/ncomms8251
  • Primary Citation of Related Structures:  
    4WQ1, 4WQR, 4WR6, 4WRA, 4WRO, 4WSD, 4WSM, 4WT1, 4WU1, 4WZD, 4WZO

  • PubMed Abstract: 

    The decoding of mRNA on the ribosome is the least accurate process during genetic information transfer. Here we propose a unified decoding mechanism based on 11 high-resolution X-ray structures of the 70S ribosome that explains the occurrence of missense errors during translation. We determined ribosome structures in rare states where incorrect tRNAs were incorporated into the peptidyl-tRNA-binding site. These structures show that in the codon-anticodon duplex, a G·U mismatch adopts the Watson-Crick geometry, indicating a shift in the tautomeric equilibrium or ionization of the nucleobase. Additional structures with mismatches in the 70S decoding centre show that the binding of any tRNA induces identical rearrangements in the centre, which favours either isosteric or close to the Watson-Crick geometry codon-anticodon pairs. Overall, the results suggest that a mismatch escapes discrimination by preserving the shape of a Watson-Crick pair and indicate that geometric selection via tautomerism or ionization dominates the translational infidelity mechanism.

    • Organizational Affiliation: 

    Biologie Structurale Intégrative, Institut de Génétique et de Biologie Moléculaire et Cellulaire, Université de Strasbourg; CNRS, UMR7104; INSERM, U964, Illkirch 67400, France.


Macromolecules

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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2G [auth 1E],
KB [auth 12]		256Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3H [auth 2E],
LB [auth 22]		239Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4I [auth 3E],
MB [auth 32]		209Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5J [auth 4E]162Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6K [auth 5E]101Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7L [auth 6E]156Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8M [auth 7E]138Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9N [auth 8E]128Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10O [auth 1I]105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11P [auth 2I]129Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12Q [auth 3I]132Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13R [auth 4I]126Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14 type ZS [auth 5I]61Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15T [auth 6I]89Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16U [auth 7I]88Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17V [auth 8I]105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18W [auth 9I]88Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19X [auth AI]93Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20Y [auth BI]106Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein ThxZ [auth 1F]27Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2HA [auth 11]276Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3IA [auth 21]206Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4JA [auth 31]210Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5KA [auth 41]182Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6LA [auth 51]180Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9MA [auth 61]148Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13NA [auth 58]140Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14OA [auth 68]122Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15PA [auth 78]150Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16QA [auth 88]141Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17RA [auth 98]118Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18SA [auth A8]112Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19TA [auth B8]146Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20UA [auth C8]118Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21VA [auth D8]101Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22WA [auth E8]113Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23XA [auth F8]96Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24YA [auth G8]110Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L25ZA [auth H8]206Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27AB [auth I8]85Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28BB [auth J8]98Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29CB [auth K8]72Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30DB [auth L8]60Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L31EB [auth M8]71Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32FB [auth N8]60Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P80339 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP80339
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33GB [auth O8]54Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P35871 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupP35871
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34HB [auth P8]49Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P80340 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP80340
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35IB [auth Q8]65Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SKU1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupQ5SKU1
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Entity ID: 1
MoleculeChains LengthOrganismImage
16S ribosomal RNAA [auth 13],
JB [auth 1G]		1,522Thermus thermophilus HB8
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Entity ID: 2
MoleculeChains LengthOrganismImage
tRNA-PheB [auth 1L],
CA [auth 3K],
D [auth 3L]		76Escherichia coli K-12
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Entity ID: 3
MoleculeChains LengthOrganismImage
tRNA-fMetBA [auth 2K],
C [auth 2L]		77Escherichia coli K-12
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Entity ID: 4
MoleculeChains LengthOrganismImage
RNA (30-MER)DA [auth 4K],
E [auth 4L]		30Thermus thermophilus HB8
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Entity ID: 5
MoleculeChains LengthOrganismImage
23S ribosomal RNAEA [auth 1H],
F [auth 14]		2,917Thermus thermophilus HB8
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Entity ID: 26
MoleculeChains LengthOrganismImage
tRNA-PheAA [auth 1K]76Escherichia coli K-12
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Entity ID: 27
MoleculeChains LengthOrganismImage
5S ribosomal RNAFA [auth 1J],
GA [auth 16]		122Thermus thermophilus HB8
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Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN
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AY [auth 5I]
CYA [auth 1G]
DYA [auth 32]
FUA [auth G8]
TX [auth 14]
AY [auth 5I],
CYA [auth 1G],
DYA [auth 32],
FUA [auth G8],
TX [auth 14],
WX [auth 3E]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG
Download Ideal Coordinates CCD File 
AAA [auth 1H]
ABA [auth 1H]
AC [auth 13]
ACA [auth 1H]
AD [auth 13]
AAA [auth 1H],
ABA [auth 1H],
AC [auth 13],
ACA [auth 1H],
AD [auth 13],
ADA [auth 1H],
AE [auth 13],
AEA [auth 1H],
AF [auth 13],
AFA [auth 1H],
AG [auth 13],
AGA [auth 1H],
AH [auth 13],
AHA [auth 1H],
AI [auth 14],
AIA [auth 1H],
AJ [auth 14],
AJA [auth 1H],
AK [auth 14],
AKA [auth 1H],
AL [auth 14],
ALA [auth 1H],
AM [auth 14],
AMA [auth 1H],
AN [auth 14],
ANA [auth 1H],
AO [auth 14],
AOA [auth 1H],
AP [auth 14],
APA [auth 1H],
AQ [auth 14],
AQA [auth 1H],
AR [auth 14],
ARA [auth 1H],
AS [auth 14],
ASA [auth 1H],
AT [auth 14],
ATA [auth 1H],
AU [auth 14],
AUA [auth 41],
AV [auth 14],
AVA [auth 1G],
AW [auth 14],
AWA [auth 1G],
AX [auth 14],
AXA [auth 1G],
AYA [auth 1G],
AZ [auth 1H],
BAA [auth 1H],
BBA [auth 1H],
BC [auth 13],
BCA [auth 1H],
BD [auth 13],
BDA [auth 1H],
BE [auth 13],
BEA [auth 1H],
BF [auth 13],
BFA [auth 1H],
BG [auth 13],
BGA [auth 1H],
BH [auth 13],
BHA [auth 1H],
BI [auth 14],
BIA [auth 1H],
BJ [auth 14],
BJA [auth 1H],
BK [auth 14],
BKA [auth 1H],
BL [auth 14],
BLA [auth 1H],
BM [auth 14],
BMA [auth 1H],
BN [auth 14],
BNA [auth 1H],
BO [auth 14],
BOA [auth 1H],
BP [auth 14],
BPA [auth 1H],
BQ [auth 14],
BQA [auth 1H],
BR [auth 14],
BRA [auth 1H],
BS [auth 14],
BSA [auth 1H],
BT [auth 14],
BTA [auth 1H],
BU [auth 14],
BUA [auth 41],
BV [auth 14],
BVA [auth 1G],
BW [auth 14],
BWA [auth 1G],
BX [auth 14],
BXA [auth 1G],
BY [auth 1K],
BYA [auth 1G],
BZ [auth 1H],
CAA [auth 1H],
CBA [auth 1H],
CC [auth 13],
CCA [auth 1H],
CD [auth 13],
CDA [auth 1H],
CE [auth 13],
CEA [auth 1H],
CF [auth 13],
CFA [auth 1H],
CG [auth 13],
CGA [auth 1H],
CH [auth 13],
CHA [auth 1H],
CI [auth 14],
CIA [auth 1H],
CJ [auth 14],
CJA [auth 1H],
CK [auth 14],
CKA [auth 1H],
CL [auth 14],
CLA [auth 1H],
CM [auth 14],
CMA [auth 1H],
CN [auth 14],
CNA [auth 1H],
CO [auth 14],
COA [auth 1H],
CP [auth 14],
CPA [auth 1H],
CQ [auth 14],
CQA [auth 1H],
CR [auth 14],
CRA [auth 1H],
CS [auth 14],
CSA [auth 1H],
CT [auth 14],
CTA [auth 1J],
CU [auth 14],
CUA [auth 78],
CV [auth 14],
CVA [auth 1G],
CW [auth 14],
CWA [auth 1G],
CX [auth 14],
CXA [auth 1G],
CY [auth 1K],
CZ [auth 1H],
DAA [auth 1H],
DBA [auth 1H],
DC [auth 13],
DCA [auth 1H],
DD [auth 13],
DDA [auth 1H],
DE [auth 13],
DEA [auth 1H],
DF [auth 13],
DFA [auth 1H],
DG [auth 13],
DGA [auth 1H],
DH [auth 13],
DHA [auth 1H],
DI [auth 14],
DIA [auth 1H],
DJ [auth 14],
DJA [auth 1H],
DK [auth 14],
DKA [auth 1H],
DL [auth 14],
DLA [auth 1H],
DM [auth 14],
DMA [auth 1H],
DN [auth 14],
DNA [auth 1H],
DO [auth 14],
DOA [auth 1H],
DP [auth 14],
DPA [auth 1H],
DQ [auth 14],
DQA [auth 1H],
DR [auth 14],
DRA [auth 1H],
DS [auth 14],
DSA [auth 1H],
DT [auth 14],
DTA [auth 1J],
DU [auth 14],
DUA [auth 88],
DV [auth 14],
DVA [auth 1G],
DW [auth 14],
DWA [auth 1G],
DX [auth 14],
DXA [auth 1G],
DY [auth 2K],
DZ [auth 1H],
EAA [auth 1H],
EBA [auth 1H],
EC [auth 13],
ECA [auth 1H],
ED [auth 13],
EDA [auth 1H],
EE [auth 13],
EEA [auth 1H],
EF [auth 13],
EFA [auth 1H],
EG [auth 13],
EGA [auth 1H],
EH [auth 13],
EHA [auth 1H],
EI [auth 14],
EIA [auth 1H],
EJ [auth 14],
EJA [auth 1H],
EK [auth 14],
EKA [auth 1H],
EL [auth 14],
ELA [auth 1H],
EM [auth 14],
EMA [auth 1H],
EN [auth 14],
ENA [auth 1H],
EO [auth 14],
EOA [auth 1H],
EP [auth 14],
EPA [auth 1H],
EQ [auth 14],
EQA [auth 1H],
ER [auth 14],
ERA [auth 1H],
ES [auth 14],
ESA [auth 1H],
ET [auth 14],
ETA [auth 1J],
EU [auth 14],
EUA [auth 88],
EV [auth 14],
EVA [auth 1G],
EW [auth 14],
EWA [auth 1G],
EX [auth 14],
EXA [auth 1G],
EY [auth 2K],
EZ [auth 1H],
FAA [auth 1H],
FBA [auth 1H],
FC [auth 13],
FCA [auth 1H],
FD [auth 13],
FDA [auth 1H],
FE [auth 13],
FEA [auth 1H],
FF [auth 13],
FFA [auth 1H],
FG [auth 13],
FGA [auth 1H],
FH [auth 13],
FHA [auth 1H],
FI [auth 14],
FIA [auth 1H],
FJ [auth 14],
FJA [auth 1H],
FK [auth 14],
FKA [auth 1H],
FL [auth 14],
FLA [auth 1H],
FM [auth 14],
FMA [auth 1H],
FN [auth 14],
FNA [auth 1H],
FO [auth 14],
FOA [auth 1H],
FP [auth 14],
FPA [auth 1H],
FQ [auth 14],
FQA [auth 1H],
FR [auth 14],
FRA [auth 1H],
FS [auth 14],
FSA [auth 1H],
FT [auth 14],
FTA [auth 1J],
FU [auth 14],
FV [auth 14],
FVA [auth 1G],
FW [auth 14],
FWA [auth 1G],
FX [auth 14],
FXA [auth 1G],
FY [auth 2K],
FZ [auth 1H],
GAA [auth 1H],
GBA [auth 1H],
GC [auth 13],
GCA [auth 1H],
GD [auth 13],
GDA [auth 1H],
GE [auth 13],
GEA [auth 1H],
GF [auth 13],
GFA [auth 1H],
GG [auth 13],
GGA [auth 1H],
GH [auth 1L],
GHA [auth 1H],
GI [auth 14],
GIA [auth 1H],
GJ [auth 14],
GJA [auth 1H],
GK [auth 14],
GKA [auth 1H],
GL [auth 14],
GLA [auth 1H],
GM [auth 14],
GMA [auth 1H],
GN [auth 14],
GNA [auth 1H],
GO [auth 14],
GOA [auth 1H],
GP [auth 14],
GPA [auth 1H],
GQ [auth 14],
GQA [auth 1H],
GR [auth 14],
GRA [auth 1H],
GS [auth 14],
GSA [auth 1H],
GT [auth 14],
GTA [auth 1J],
GU [auth 14],
GUA [auth I8],
GV [auth 14],
GVA [auth 1G],
GW [auth 14],
GWA [auth 1G],
GX [auth 14],
GXA [auth 1G],
GY [auth 2K],
GZ [auth 1H],
HAA [auth 1H],
HBA [auth 1H],
HC [auth 13],
HCA [auth 1H],
HD [auth 13],
HDA [auth 1H],
HE [auth 13],
HEA [auth 1H],
HF [auth 13],
HFA [auth 1H],
HG [auth 13],
HGA [auth 1H],
HH [auth 2L],
HHA [auth 1H],
HI [auth 14],
HIA [auth 1H],
HJ [auth 14],
HJA [auth 1H],
HK [auth 14],
HKA [auth 1H],
HL [auth 14],
HLA [auth 1H],
HM [auth 14],
HMA [auth 1H],
HN [auth 14],
HNA [auth 1H],
HO [auth 14],
HOA [auth 1H],
HP [auth 14],
HPA [auth 1H],
HQ [auth 14],
HQA [auth 1H],
HR [auth 14],
HRA [auth 1H],
HS [auth 14],
HSA [auth 1H],
HT [auth 14],
HTA [auth 1J],
HU [auth 14],
HUA [auth J8],
HV [auth 14],
HVA [auth 1G],
HW [auth 14],
HWA [auth 1G],
HX [auth 14],
HXA [auth 1G],
HY [auth 2K],
HZ [auth 1H],
IAA [auth 1H],
IBA [auth 1H],
IC [auth 13],
ICA [auth 1H],
ID [auth 13],
IDA [auth 1H],
IE [auth 13],
IEA [auth 1H],
IF [auth 13],
IFA [auth 1H],
IG [auth 13],
IGA [auth 1H],
IH [auth 2L],
IHA [auth 1H],
II [auth 14],
IIA [auth 1H],
IJ [auth 14],
IJA [auth 1H],
IK [auth 14],
IKA [auth 1H],
IL [auth 14],
ILA [auth 1H],
IM [auth 14],
IMA [auth 1H],
IN [auth 14],
INA [auth 1H],
IO [auth 14],
IOA [auth 1H],
IP [auth 14],
IPA [auth 1H],
IQ [auth 14],
IQA [auth 1H],
IR [auth 14],
IRA [auth 1H],
IS [auth 14],
ISA [auth 1H],
IT [auth 14],
ITA [auth 1J],
IU [auth 14],
IUA [auth L8],
IV [auth 14],
IVA [auth 1G],
IW [auth 14],
IWA [auth 1G],
IX [auth 14],
IXA [auth 1G],
IY [auth 2K],
IZ [auth 1H],
JAA [auth 1H],
JBA [auth 1H],
JC [auth 13],
JCA [auth 1H],
JD [auth 13],
JDA [auth 1H],
JE [auth 13],
JEA [auth 1H],
JF [auth 13],
JFA [auth 1H],
JG [auth 13],
JGA [auth 1H],
JH [auth 2L],
JHA [auth 1H],
JI [auth 14],
JIA [auth 1H],
JJ [auth 14],
JJA [auth 1H],
JK [auth 14],
JKA [auth 1H],
JL [auth 14],
JLA [auth 1H],
JM [auth 14],
JMA [auth 1H],
JN [auth 14],
JNA [auth 1H],
JO [auth 14],
JOA [auth 1H],
JP [auth 14],
JPA [auth 1H],
JQ [auth 14],
JQA [auth 1H],
JR [auth 14],
JRA [auth 1H],
JS [auth 14],
JSA [auth 1H],
JT [auth 14],
JTA [auth 16],
JU [auth 14],
JUA [auth P8],
JV [auth 14],
JVA [auth 1G],
JW [auth 14],
JWA [auth 1G],
JX [auth 14],
JXA [auth 1G],
JY [auth 2K],
JZ [auth 1H],
KAA [auth 1H],
KBA [auth 1H],
KC [auth 13],
KCA [auth 1H],
KD [auth 13],
KDA [auth 1H],
KE [auth 13],
KEA [auth 1H],
KF [auth 13],
KFA [auth 1H],
KG [auth 13],
KGA [auth 1H],
KH [auth 2L],
KHA [auth 1H],
KI [auth 14],
KIA [auth 1H],
KJ [auth 14],
KJA [auth 1H],
KK [auth 14],
KKA [auth 1H],
KL [auth 14],
KLA [auth 1H],
KM [auth 14],
KMA [auth 1H],
KN [auth 14],
KNA [auth 1H],
KO [auth 14],
KOA [auth 1H],
KP [auth 14],
KPA [auth 1H],
KQ [auth 14],
KQA [auth 1H],
KR [auth 14],
KRA [auth 1H],
KS [auth 14],
KSA [auth 1H],
KT [auth 14],
KTA [auth 16],
KU [auth 14],
KUA [auth 1G],
KV [auth 14],
KVA [auth 1G],
KW [auth 14],
KWA [auth 1G],
KX [auth 14],
KXA [auth 1G],
KY [auth 2K],
KZ [auth 1H],
LAA [auth 1H],
LBA [auth 1H],
LC [auth 13],
LCA [auth 1H],
LD [auth 13],
LDA [auth 1H],
LE [auth 13],
LEA [auth 1H],
LF [auth 13],
LFA [auth 1H],
LG [auth 13],
LGA [auth 1H],
LH [auth 3L],
LHA [auth 1H],
LI [auth 14],
LIA [auth 1H],
LJ [auth 14],
LJA [auth 1H],
LK [auth 14],
LKA [auth 1H],
LL [auth 14],
LLA [auth 1H],
LM [auth 14],
LMA [auth 1H],
LN [auth 14],
LNA [auth 1H],
LO [auth 14],
LOA [auth 1H],
LP [auth 14],
LPA [auth 1H],
LQ [auth 14],
LQA [auth 1H],
LR [auth 14],
LRA [auth 1H],
LS [auth 14],
LSA [auth 1H],
LT [auth 14],
LTA [auth 16],
LU [auth 14],
LUA [auth 1G],
LV [auth 14],
LVA [auth 1G],
LW [auth 14],
LWA [auth 1G],
LX [auth 14],
LXA [auth 1G],
LY [auth 1H],
LZ [auth 1H],
MAA [auth 1H],
MBA [auth 1H],
MC [auth 13],
MCA [auth 1H],
MD [auth 13],
MDA [auth 1H],
ME [auth 13],
MEA [auth 1H],
MF [auth 13],
MFA [auth 1H],
MG [auth 13],
MGA [auth 1H],
MH [auth 3L],
MHA [auth 1H],
MI [auth 14],
MIA [auth 1H],
MJ [auth 14],
MJA [auth 1H],
MK [auth 14],
MKA [auth 1H],
ML [auth 14],
MLA [auth 1H],
MM [auth 14],
MMA [auth 1H],
MN [auth 14],
MNA [auth 1H],
MO [auth 14],
MOA [auth 1H],
MP [auth 14],
MPA [auth 1H],
MQ [auth 14],
MQA [auth 1H],
MR [auth 14],
MRA [auth 1H],
MS [auth 14],
MSA [auth 1H],
MT [auth 14],
MTA [auth 16],
MU [auth 14],
MUA [auth 1G],
MV [auth 14],
MVA [auth 1G],
MW [auth 14],
MWA [auth 1G],
MX [auth 14],
MXA [auth 1G],
MY [auth 1H],
MZ [auth 1H],
NAA [auth 1H],
NB [auth 13],
NBA [auth 1H],
NC [auth 13],
NCA [auth 1H],
ND [auth 13],
NDA [auth 1H],
NE [auth 13],
NEA [auth 1H],
NF [auth 13],
NFA [auth 1H],
NG [auth 13],
NGA [auth 1H],
NH [auth 3L],
NHA [auth 1H],
NI [auth 14],
NIA [auth 1H],
NJ [auth 14],
NJA [auth 1H],
NK [auth 14],
NKA [auth 1H],
NL [auth 14],
NLA [auth 1H],
NM [auth 14],
NMA [auth 1H],
NN [auth 14],
NNA [auth 1H],
NO [auth 14],
NOA [auth 1H],
NP [auth 14],
NPA [auth 1H],
NQ [auth 14],
NQA [auth 1H],
NR [auth 14],
NRA [auth 1H],
NS [auth 14],
NSA [auth 1H],
NT [auth 14],
NTA [auth 16],
NU [auth 14],
NUA [auth 1G],
NV [auth 14],
NVA [auth 1G],
NW [auth 14],
NWA [auth 1G],
NX [auth 14],
NXA [auth 1G],
NY [auth 1H],
NZ [auth 1H],
OAA [auth 1H],
OB [auth 13],
OBA [auth 1H],
OC [auth 13],
OCA [auth 1H],
OD [auth 13],
ODA [auth 1H],
OE [auth 13],
OEA [auth 1H],
OF [auth 13],
OFA [auth 1H],
OG [auth 13],
OGA [auth 1H],
OH [auth 14],
OHA [auth 1H],
OI [auth 14],
OIA [auth 1H],
OJ [auth 14],
OJA [auth 1H],
OK [auth 14],
OKA [auth 1H],
OL [auth 14],
OLA [auth 1H],
OM [auth 14],
OMA [auth 1H],
ON [auth 14],
ONA [auth 1H],
OO [auth 14],
OOA [auth 1H],
OP [auth 14],
OPA [auth 1H],
OQ [auth 14],
OQA [auth 1H],
OR [auth 14],
ORA [auth 1H],
OS [auth 14],
OSA [auth 1H],
OT [auth 14],
OTA [auth 16],
OU [auth 14],
OUA [auth 1G],
OV [auth 14],
OVA [auth 1G],
OW [auth 14],
OWA [auth 1G],
OX [auth 14],
OXA [auth 1G],
OY [auth 1H],
OZ [auth 1H],
PAA [auth 1H],
PB [auth 13],
PBA [auth 1H],
PC [auth 13],
PCA [auth 1H],
PD [auth 13],
PDA [auth 1H],
PE [auth 13],
PEA [auth 1H],
PF [auth 13],
PFA [auth 1H],
PG [auth 13],
PGA [auth 1H],
PH [auth 14],
PHA [auth 1H],
PI [auth 14],
PIA [auth 1H],
PJ [auth 14],
PJA [auth 1H],
PK [auth 14],
PKA [auth 1H],
PL [auth 14],
PLA [auth 1H],
PM [auth 14],
PMA [auth 1H],
PN [auth 14],
PNA [auth 1H],
PO [auth 14],
POA [auth 1H],
PP [auth 14],
PPA [auth 1H],
PQ [auth 14],
PQA [auth 1H],
PR [auth 14],
PRA [auth 1H],
PS [auth 14],
PSA [auth 1H],
PT [auth 14],
PTA [auth 16],
PU [auth 14],
PUA [auth 1G],
PV [auth 14],
PVA [auth 1G],
PW [auth 14],
PWA [auth 1G],
PX [auth 14],
PXA [auth 1G],
PY [auth 1H],
PZ [auth 1H],
QAA [auth 1H],
QB [auth 13],
QBA [auth 1H],
QC [auth 13],
QCA [auth 1H],
QD [auth 13],
QDA [auth 1H],
QE [auth 13],
QEA [auth 1H],
QF [auth 13],
QFA [auth 1H],
QG [auth 13],
QGA [auth 1H],
QH [auth 14],
QHA [auth 1H],
QI [auth 14],
QIA [auth 1H],
QJ [auth 14],
QJA [auth 1H],
QK [auth 14],
QKA [auth 1H],
QL [auth 14],
QLA [auth 1H],
QM [auth 14],
QMA [auth 1H],
QN [auth 14],
QNA [auth 1H],
QO [auth 14],
QOA [auth 1H],
QP [auth 14],
QPA [auth 1H],
QQ [auth 14],
QQA [auth 1H],
QR [auth 14],
QRA [auth 1H],
QS [auth 14],
QSA [auth 1H],
QT [auth 14],
QTA [auth 16],
QU [auth 14],
QUA [auth 1G],
QV [auth 14],
QVA [auth 1G],
QW [auth 14],
QWA [auth 1G],
QX [auth 14],
QXA [auth 1G],
QY [auth 1H],
QZ [auth 1H],
RAA [auth 1H],
RB [auth 13],
RBA [auth 1H],
RC [auth 13],
RCA [auth 1H],
RD [auth 13],
RDA [auth 1H],
RE [auth 13],
REA [auth 1H],
RF [auth 13],
RFA [auth 1H],
RG [auth 13],
RGA [auth 1H],
RH [auth 14],
RHA [auth 1H],
RI [auth 14],
RIA [auth 1H],
RJ [auth 14],
RJA [auth 1H],
RK [auth 14],
RKA [auth 1H],
RL [auth 14],
RLA [auth 1H],
RM [auth 14],
RMA [auth 1H],
RN [auth 14],
RNA [auth 1H],
RO [auth 14],
ROA [auth 1H],
RP [auth 14],
RPA [auth 1H],
RQ [auth 14],
RQA [auth 1H],
RR [auth 14],
RRA [auth 1H],
RS [auth 14],
RSA [auth 1H],
RT [auth 14],
RTA [auth 16],
RU [auth 14],
RUA [auth 1G],
RV [auth 14],
RVA [auth 1G],
RW [auth 14],
RWA [auth 1G],
RX [auth 14],
RXA [auth 1G],
RY [auth 1H],
RZ [auth 1H],
SAA [auth 1H],
SB [auth 13],
SBA [auth 1H],
SC [auth 13],
SCA [auth 1H],
SD [auth 13],
SDA [auth 1H],
SE [auth 13],
SEA [auth 1H],
SF [auth 13],
SFA [auth 1H],
SG [auth 13],
SGA [auth 1H],
SH [auth 14],
SHA [auth 1H],
SI [auth 14],
SIA [auth 1H],
SJ [auth 14],
SJA [auth 1H],
SK [auth 14],
SKA [auth 1H],
SL [auth 14],
SLA [auth 1H],
SM [auth 14],
SMA [auth 1H],
SN [auth 14],
SNA [auth 1H],
SO [auth 14],
SOA [auth 1H],
SP [auth 14],
SPA [auth 1H],
SQ [auth 14],
SQA [auth 1H],
SR [auth 14],
SRA [auth 1H],
SS [auth 14],
SSA [auth 1H],
ST [auth 14],
STA [auth 16],
SU [auth 14],
SUA [auth 1G],
SV [auth 14],
SVA [auth 1G],
SW [auth 14],
SWA [auth 1G],
SX [auth 14],
SXA [auth 1G],
SY [auth 1H],
SZ [auth 1H],
TAA [auth 1H],
TB [auth 13],
TBA [auth 1H],
TC [auth 13],
TCA [auth 1H],
TD [auth 13],
TDA [auth 1H],
TE [auth 13],
TEA [auth 1H],
TF [auth 13],
TFA [auth 1H],
TG [auth 13],
TGA [auth 1H],
TH [auth 14],
THA [auth 1H],
TI [auth 14],
TIA [auth 1H],
TJ [auth 14],
TJA [auth 1H],
TK [auth 14],
TKA [auth 1H],
TL [auth 14],
TLA [auth 1H],
TM [auth 14],
TMA [auth 1H],
TN [auth 14],
TNA [auth 1H],
TO [auth 14],
TOA [auth 1H],
TP [auth 14],
TPA [auth 1H],
TQ [auth 14],
TQA [auth 1H],
TR [auth 14],
TRA [auth 1H],
TS [auth 14],
TSA [auth 1H],
TT [auth 14],
TTA [auth 16],
TU [auth 14],
TUA [auth 1G],
TV [auth 14],
TVA [auth 1G],
TW [auth 14],
TWA [auth 1G],
TXA [auth 1G],
TY [auth 1H],
TZ [auth 1H],
UAA [auth 1H],
UB [auth 13],
UBA [auth 1H],
UC [auth 13],
UCA [auth 1H],
UD [auth 13],
UDA [auth 1H],
UE [auth 13],
UEA [auth 1H],
UF [auth 13],
UFA [auth 1H],
UG [auth 13],
UGA [auth 1H],
UH [auth 14],
UHA [auth 1H],
UI [auth 14],
UIA [auth 1H],
UJ [auth 14],
UJA [auth 1H],
UK [auth 14],
UKA [auth 1H],
UL [auth 14],
ULA [auth 1H],
UM [auth 14],
UMA [auth 1H],
UN [auth 14],
UNA [auth 1H],
UO [auth 14],
UOA [auth 1H],
UP [auth 14],
UPA [auth 1H],
UQ [auth 14],
UQA [auth 1H],
UR [auth 14],
URA [auth 1H],
US [auth 14],
USA [auth 1H],
UT [auth 14],
UTA [auth 16],
UU [auth 14],
UUA [auth 1G],
UV [auth 14],
UVA [auth 1G],
UW [auth 14],
UWA [auth 1G],
UX [auth 3E],
UXA [auth 1G],
UY [auth 1H],
UZ [auth 1H],
VAA [auth 1H],
VB [auth 13],
VBA [auth 1H],
VC [auth 13],
VCA [auth 1H],
VD [auth 13],
VDA [auth 1H],
VE [auth 13],
VEA [auth 1H],
VF [auth 13],
VFA [auth 1H],
VG [auth 13],
VGA [auth 1H],
VH [auth 14],
VHA [auth 1H],
VI [auth 14],
VIA [auth 1H],
VJ [auth 14],
VJA [auth 1H],
VK [auth 14],
VKA [auth 1H],
VL [auth 14],
VLA [auth 1H],
VM [auth 14],
VMA [auth 1H],
VN [auth 14],
VNA [auth 1H],
VO [auth 14],
VOA [auth 1H],
VP [auth 14],
VPA [auth 1H],
VQ [auth 14],
VQA [auth 1H],
VR [auth 14],
VRA [auth 1H],
VS [auth 14],
VSA [auth 1H],
VT [auth 14],
VTA [auth 16],
VU [auth 14],
VUA [auth 1G],
VV [auth 14],
VVA [auth 1G],
VW [auth 14],
VWA [auth 1G],
VX [auth 3E],
VXA [auth 1G],
VY [auth 1H],
VZ [auth 1H],
WAA [auth 1H],
WB [auth 13],
WBA [auth 1H],
WC [auth 13],
WCA [auth 1H],
WD [auth 13],
WDA [auth 1H],
WE [auth 13],
WEA [auth 1H],
WF [auth 13],
WFA [auth 1H],
WG [auth 13],
WGA [auth 1H],
WH [auth 14],
WHA [auth 1H],
WI [auth 14],
WIA [auth 1H],
WJ [auth 14],
WJA [auth 1H],
WK [auth 14],
WKA [auth 1H],
WL [auth 14],
WLA [auth 1H],
WM [auth 14],
WMA [auth 1H],
WN [auth 14],
WNA [auth 1H],
WO [auth 14],
WOA [auth 1H],
WP [auth 14],
WPA [auth 1H],
WQ [auth 14],
WQA [auth 1H],
WR [auth 14],
WRA [auth 1H],
WS [auth 14],
WSA [auth 1H],
WT [auth 14],
WTA [auth 11],
WU [auth 14],
WUA [auth 1G],
WV [auth 14],
WVA [auth 1G],
WW [auth 14],
WWA [auth 1G],
WXA [auth 1G],
WY [auth 1H],
WZ [auth 1H],
XAA [auth 1H],
XB [auth 13],
XBA [auth 1H],
XC [auth 13],
XCA [auth 1H],
XD [auth 13],
XDA [auth 1H],
XE [auth 13],
XEA [auth 1H],
XF [auth 13],
XFA [auth 1H],
XG [auth 13],
XGA [auth 1H],
XH [auth 14],
XHA [auth 1H],
XI [auth 14],
XIA [auth 1H],
XJ [auth 14],
XJA [auth 1H],
XK [auth 14],
XKA [auth 1H],
XL [auth 14],
XLA [auth 1H],
XM [auth 14],
XMA [auth 1H],
XN [auth 14],
XNA [auth 1H],
XO [auth 14],
XOA [auth 1H],
XP [auth 14],
XPA [auth 1H],
XQ [auth 14],
XQA [auth 1H],
XR [auth 14],
XRA [auth 1H],
XS [auth 14],
XSA [auth 1H],
XT [auth 14],
XTA [auth 11],
XU [auth 14],
XUA [auth 1G],
XV [auth 14],
XVA [auth 1G],
XW [auth 14],
XWA [auth 1G],
XX [auth 5E],
XXA [auth 1G],
XY [auth 1H],
XZ [auth 1H],
YAA [auth 1H],
YB [auth 13],
YBA [auth 1H],
YC [auth 13],
YCA [auth 1H],
YD [auth 13],
YDA [auth 1H],
YE [auth 13],
YEA [auth 1H],
YF [auth 13],
YFA [auth 1H],
YG [auth 13],
YGA [auth 1H],
YH [auth 14],
YHA [auth 1H],
YI [auth 14],
YIA [auth 1H],
YJ [auth 14],
YJA [auth 1H],
YK [auth 14],
YKA [auth 1H],
YL [auth 14],
YLA [auth 1H],
YM [auth 14],
YMA [auth 1H],
YN [auth 14],
YNA [auth 1H],
YO [auth 14],
YOA [auth 1H],
YP [auth 14],
YPA [auth 1H],
YQ [auth 14],
YQA [auth 1H],
YR [auth 14],
YRA [auth 1H],
YS [auth 14],
YSA [auth 1H],
YT [auth 14],
YTA [auth 21],
YU [auth 14],
YUA [auth 1G],
YV [auth 14],
YVA [auth 1G],
YW [auth 14],
YWA [auth 1G],
YX [auth 3I],
YXA [auth 1G],
YY [auth 1H],
YZ [auth 1H],
ZAA [auth 1H],
ZB [auth 13],
ZBA [auth 1H],
ZC [auth 13],
ZCA [auth 1H],
ZD [auth 13],
ZDA [auth 1H],
ZE [auth 13],
ZEA [auth 1H],
ZF [auth 13],
ZFA [auth 1H],
ZG [auth 13],
ZGA [auth 1H],
ZH [auth 14],
ZHA [auth 1H],
ZI [auth 14],
ZIA [auth 1H],
ZJ [auth 14],
ZJA [auth 1H],
ZK [auth 14],
ZKA [auth 1H],
ZL [auth 14],
ZLA [auth 1H],
ZM [auth 14],
ZMA [auth 1H],
ZN [auth 14],
ZNA [auth 1H],
ZO [auth 14],
ZOA [auth 1H],
ZP [auth 14],
ZPA [auth 1H],
ZQ [auth 14],
ZQA [auth 1H],
ZR [auth 14],
ZRA [auth 1H],
ZS [auth 14],
ZSA [auth 1H],
ZT [auth 14],
ZTA [auth 21],
ZU [auth 14],
ZUA [auth 1G],
ZV [auth 14],
ZVA [auth 1G],
ZW [auth 14],
ZWA [auth 1G],
ZX [auth 5I],
ZXA [auth 1G],
ZY [auth 1H],
ZZ [auth 1H]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.193 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 209.4α = 90
b = 447.7β = 90
c = 619.4γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
PDB_EXTRACTdata extraction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-06-10
    Type: Initial release
  • Version 1.1: 2015-06-17
    Changes: Database references
  • Version 2.0: 2019-06-26
    Changes: Data collection, Non-polymer description, Structure summary
  • Version 2.1: 2024-01-10
    Changes: Data collection, Database references, Derived calculations, Refinement description