4ZPM | pdb_00004zpm

Crystal Structure of Protocadherin Alpha C2 EC1-3

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Cadherin	8050633	4007535	SCOP2 (2022-06-29)
B	SCOP2 Family	Cadherin	8091865	4007535	SCOP2 (2022-06-29)
B	SCOP2 Family	Cadherin	8091866	4007535	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Cadherin-like	8091867	3002049	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Cadherin-like	8091868	3002049	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Cadherin-like	8091869	3002049	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091867	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091868	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091869	3002049	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Cadherin_2	e4zpmB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
B	Cadherin	e4zpmB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
A	Cadherin_2	e4zpmA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
A	Cadherin	e4zpmA3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)
A	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF08266	Cadherin-like (Cadherin_2)	Cadherin-like	This cadherin domain is usually the most N-terminal copy of the domain.	Domain
A, B	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Protein Pcdhac2	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cell adhesion molecule binding protein binding	multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development cellular component organization or biogenesis system development developmental process plasma membrane bounded cell projection organization axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron projection guidance neuron development cellular process serotonergic neuron axon guidance cell adhesion cell-cell adhesion homophilic cell-cell adhesion	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR031904	Cadherin, C-terminal catenin-binding domain	Domain
A, B	IPR032455	Cadherin, cytoplasmic C-terminal domain	Domain
A, B	IPR050174	Protocadherin/Cadherin-related Cell Adhesion	Family
A, B	IPR013164	Cadherin, N-terminal	Domain
A, B	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A, B	IPR020894	Cadherin conserved site	Conserved Site
A, B	IPR002126	Cadherin-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.