5A3D

Structural insights into the recognition of cisplatin and AAF-dG lesions by Rad14 (XPA)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF05181	e5a3dA2	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: PF05181	ECOD (1.6)
A	F_UNCLASSIFIED	e5a3dA1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
B	PF05181	e5a3dB2	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: PF05181	ECOD (1.6)
B	F_UNCLASSIFIED	e5a3dB1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05181	XPA protein C-terminus (XPA_C)	XPA protein C-terminus	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	DNA REPAIR PROTEIN RAD14	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding DNA binding organic cyclic compound binding damaged DNA binding nucleic acid binding	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleotide-excision repair involved in interstrand cross-link repair nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response nucleotide-excision repair response to stress metabolic process cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleotide-excision repair involved in interstrand cross-link repair nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response nucleotide-excision repair response to stress metabolic process cellular process interstrand cross-link repair macromolecule metabolic process DNA repair base-excision repair nucleotide-excision repair, DNA damage recognition chromosome organization cellular component organization organelle organization cellular component organization or biogenesis response to light stimulus cellular response to environmental stimulus cellular response to light stimulus cellular response to radiation response to UV UV-damage excision repair response to radiation response to abiotic stimulus cellular response to abiotic stimulus cellular response to UV	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle cellular anatomical entity nucleotide-excision repair factor 1 complex intracellular organelle organelle nucleotide-excision repair complex
C	5'-D(DTPCPTPCPTPAPC 8FGPTPCPAPTPCPDAPCP)-3'	-	-	-
D	5'-D(DG 5IUPGPA 5IUPGPAPCPG 5IUPAPGPAPDGPAP)-3'	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR022658	XPA, conserved site	Conserved Site
A, B	IPR009061	Putative DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR022656	XPA, C-terminal	Domain
A, B	IPR022652	Zinc finger, XPA-type, conserved site	Conserved Site
A, B	IPR000465	XPA/RAD14	Family
A, B	IPR037129	XPA domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.