Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
JSCOP2B SuperfamilyRibosomal protein S108044019 3001336 SCOP2B (2022-02-25)
KSCOP2B SuperfamilyTranslational machinery components8044020 3000571 SCOP2B (2022-02-25)
LSCOP2B SuperfamilyNucleic acid-binding proteins8044021 3000135 SCOP2B (2022-02-25)
MSCOP2B SuperfamilyS13-like H2TH domain8003708 3000053 SCOP2B (2022-02-25)
NSCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052585 3000068 SCOP2B (2022-02-25)
PSCOP2B SuperfamilyRibosomal protein S168044025 3000680 SCOP2B (2022-02-25)
QSCOP2B SuperfamilyNucleic acid-binding proteins8044026 3000135 SCOP2B (2022-02-25)
RSCOP2B SuperfamilyRibosomal protein S188044028 3001191 SCOP2B (2022-02-25)
SSCOP2B SuperfamilyRibosomal protein S198044027 3000686 SCOP2B (2022-02-25)
BSCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8044010 3001397 SCOP2B (2022-02-25)
TSCOP2B SuperfamilyRibosomal protein S208044029 3001362 SCOP2B (2022-02-25)
V [auth W]SCOP2B SuperfamilyNucleic acid-binding proteins8041946 3000135 SCOP2B (2022-02-25)
W [auth X]SCOP2B SuperfamilyTranslation initiation factor IF3 C-terminal domain8033780 3001514 SCOP2B (2022-02-25)
CSCOP2B SuperfamilyRibosomal protein S3 C-terminal domain8044012 3001053 SCOP2B (2022-02-25)
CSCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II)8044011 3001043 SCOP2B (2022-02-25)
DSCOP2B SuperfamilyAlpha-L RNA-binding motif8044014 3001473 SCOP2B (2022-02-25)
ESCOP2B SuperfamilydsRNA-binding domain-like8044017 3000985 SCOP2B (2022-02-25)
ESCOP2B SuperfamilyRibosomal protein S5 domain 2-like8044015 3000100 SCOP2B (2022-02-25)
GSCOP2B SuperfamilyRibosomal protein S78033523 3000799 SCOP2B (2022-02-25)
ISCOP2B SuperfamilyRibosomal protein S5 domain 2-like8037678 3000100 SCOP2B (2022-02-25)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
JRibosomal_S10e5lmpJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
KRibosomal_S11e5lmpK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
LRibosom_S12_S23e5lmpL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
MRibosomal_S13_1e5lmpM1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
NRibosomal_S14e5lmpN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14ECOD (1.6)
ORibosomal_S15_1e5lmpO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
PRibosomal_S16_1e5lmpP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16_1ECOD (1.6)
QRibosomal_S17_1e5lmpQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
RRibosomal_S18e5lmpR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
SRibosomal_S19e5lmpS1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
BRibosomal_S2e5lmpB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
TRibosomal_S20pe5lmpT1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
V [auth W]eIF-1ae5lmpW1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: eIF-1aECOD (1.6)
W [auth X]IF3_Ne5lmpX2 A: a+b two layersX: beta-GraspH: IF3-N (From Topology)T: IF3-NF: IF3_NECOD (1.6)
W [auth X]IF3_Ce5lmpX1 A: a+b two layersX: IF3-likeH: Translation initiation factor IF3, C-terminal domain (From Topology)T: Translation initiation factor IF3, C-terminal domainF: IF3_CECOD (1.6)
CRibosomal_S3_Ce5lmpC2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
CKH_2_1e5lmpC1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
DS4e5lmpD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
ERibosomal_S5_Ce5lmpE1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
ERibosomal_S5e5lmpE2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
FRibosomal_S6e5lmpF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
GRibosomal_S7_1e5lmpG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
HRibosomal_S8_Ne5lmpH1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
HRibosomal_S8_Ce5lmpH2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
IRibosomal_S9e5lmpI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
J PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.DomainDomain
K PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- FamilyFamily
L PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- FamilyFamily
M PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- FamilyFamily
N PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- FamilyFamily
O PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- DomainDomain
P PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- FamilyFamily
Q PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- DomainDomain
R PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- FamilyFamily
S PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- DomainDomain
B PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- FamilyFamily
T PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- FamilyFamily
U [auth V]PF1707030S ribosomal protein Thx (Thx)30S ribosomal protein Thx- FamilyFamily
V [auth W]PF01176Translation initiation factor 1A / IF-1 (eIF-1a)Translation initiation factor 1A / IF-1This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1.DomainDomain
W [auth X]PF05198Translation initiation factor IF-3, N-terminal domain (IF3_N)Translation initiation factor IF-3, N-terminal domain- DomainDomain
W [auth X]PF00707Translation initiation factor IF-3, C-terminal domain (IF3_C)Translation initiation factor IF-3, C-terminal domain- DomainDomain
C PF07650KH domain (KH_2)KH domain- DomainDomain
C PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.DomainDomain
D PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- FamilyFamily
D PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
DomainDomain
E PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- DomainDomain
E PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- DomainDomain
F PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- DomainDomain
G PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.DomainDomain
H PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- DomainDomain
I PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- FamilyFamily

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A 16S rRNAnonenonenone
J 30S ribosomal protein S10
    K 30S ribosomal protein S11
      L 30S ribosomal protein S12
        M 30S ribosomal protein S13
          N 30S ribosomal protein S14 type Z
            O 30S ribosomal protein S15
              P 30S ribosomal protein S16
                Q 30S ribosomal protein S17
                  R 30S ribosomal protein S18
                    S 30S ribosomal protein S19
                      B 30S ribosomal protein S2
                        T 30S ribosomal protein S20
                          U [auth V]30S ribosomal protein Thx
                            V [auth W]Translation initiation factor IF-1
                              W [auth X]Translation initiation factor IF-3
                                X [auth Y]mRNAnonenonenone
                                C 30S ribosomal protein S3
                                  D 30S ribosomal protein S4
                                    E 30S ribosomal protein S5
                                      F 30S ribosomal protein S6
                                        G 30S ribosomal protein S7
                                          H 30S ribosomal protein S8
                                            I 30S ribosomal protein S9