6LK8
Structure of Xenopus laevis Cytoplasmic Ring subunit.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | Nucleoporin NUP85 | 8105018 | 4006614 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Coat and nuclear envelope proteins | 8105019 | 3002276 | SCOP2 (2022-06-29) |
X [auth b] | SCOP2B Superfamily | Coat and nuclear envelope proteins | 8105019 | 3002276 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
FA [auth j] | Nucleoporin_N | e6lk8j2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
FA [auth j] | Nucleoporin_C_C | e6lk8j1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_C | ECOD (1.6) |
J | Nucleoporin_N | e6lk8J2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
J | Nucleoporin_C_C | e6lk8J1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_C | ECOD (1.6) |
K [auth S] | TPR_15 | e6lk8S1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_15 | ECOD (1.6) |
L [auth T] | TPR_15 | e6lk8T1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_15 | ECOD (1.6) |
M [auth U] | TPR_15 | e6lk8U1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_15 | ECOD (1.6) |
N [auth V] | TPR_15 | e6lk8V1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_15 | ECOD (1.6) |
B | Nucleopor_Nup85 | e6lk8B1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology) | T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | F: Nucleopor_Nup85 | ECOD (1.6) |
X [auth b] | Nucleopor_Nup85 | e6lk8b1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology) | T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | F: Nucleopor_Nup85 | ECOD (1.6) |
C | ANAPC4_WD40_7 | e6lk8C1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: ANAPC4_WD40_7 | ECOD (1.6) |
Y [auth c] | ANAPC4_WD40_8 | e6lk8c1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: ANAPC4_WD40_8 | ECOD (1.6) |
D | ANAPC4_WD40_6 | e6lk8D1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_6 | ECOD (1.6) |
Z [auth d] | ANAPC4_WD40_6 | e6lk8d1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_6 | ECOD (1.6) |
AA [auth e] | Nup160 | e6lk8e1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nup160 | ECOD (1.6) |
AA [auth e] | KOG4521_1st | e6lk8e2 | A: alpha arrays | X: Nucleoporin NUP120 helical domain (From Topology) | H: Nucleoporin NUP120 helical domain (From Topology) | T: Nucleoporin NUP120 helical domain | F: KOG4521_1st | ECOD (1.6) |
AA [auth e] | KOG4521_2nd | e6lk8e3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: KOG4521_2nd | ECOD (1.6) |
E | Nup160 | e6lk8E2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nup160 | ECOD (1.6) |
E | KOG4521_1st | e6lk8E3 | A: alpha arrays | X: Nucleoporin NUP120 helical domain (From Topology) | H: Nucleoporin NUP120 helical domain (From Topology) | T: Nucleoporin NUP120 helical domain | F: KOG4521_1st | ECOD (1.6) |
E | KOG4521_2nd | e6lk8E1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: KOG4521_2nd | ECOD (1.6) |
BA [auth f] | ANAPC4_WD40_10 | e6lk8f1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_10 | ECOD (1.6) |
F | ANAPC4_WD40_10 | e6lk8F1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_10 | ECOD (1.6) |
DA [auth h] | ANAPC4_WD40_14 | e6lk8h1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_14 | ECOD (1.6) |
H | ANAPC4_WD40_14 | e6lk8H1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_14 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, W [auth a] | PF11894 | Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192) | Nuclear pore complex scaffold, nucleoporins 186/192/205 | - | Repeat |
FA [auth j], J | PF03177 | Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C) | Non-repetitive/WGA-negative nucleoporin C-terminal | - | Family |
FA [auth j], J | PF08801 | Nup133 N terminal like (Nucleoporin_N) | Nup133 N terminal like | - | Repeat |
B, X [auth b] | PF07575 | Nup85 Nucleoporin (Nucleopor_Nup85) | Nup85 Nucleoporin | - | Family |
C, Y [auth c] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
D, Z [auth d] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
BA [auth f], F | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
DA [auth h], H | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
EA [auth i], I | PF04121 | Nuclear pore protein 84 / 107 (Nup84_Nup100) | Nuclear pore protein 84 / 107 | - | Family |