6MTC

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth B]	SCOP2B Superfamily	Translational proteins	8078357	3000811	SCOP2B (2022-06-29)
G [auth C]	SCOP2B Superfamily	60S ribosomal protein L4 C-terminal domain-like	8052828	3002143	SCOP2B (2022-06-29)
G [auth C]	SCOP2B Superfamily	Ribosomal protein L4	8052829	3001146	SCOP2B (2022-06-29)
H [auth D]	SCOP2B Superfamily	Translational machinery components	8052886	3000571	SCOP2B (2022-06-29)
M [auth I]	SCOP2B Superfamily	Ribosomal protein L16p/L10e	8097320	3000884	SCOP2B (2022-06-29)
N [auth J]	SCOP2B Superfamily	RL5-like	8073894	3001709	SCOP2B (2022-06-29)
Q [auth N]	SCOP2B Superfamily	Ribosomal proteins S24e L23 and L15e	8082477	3000210	SCOP2B (2022-06-29)
Y [auth V]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8072048	3000433	SCOP2B (2022-06-29)
BA [auth Y]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8076754	3000334	SCOP2B (2022-06-29)
DA [auth a]	SCOP2B Superfamily	Ribosomal proteins L15p and L18e	8097818	3001045	SCOP2B (2022-06-29)
FA [auth c]	SCOP2B Superfamily	L30e-like	8094953	3001739	SCOP2B (2022-06-29)
IA [auth f]	SCOP2B Superfamily	Translational proteins	8093714	3000811	SCOP2B (2022-06-29)
LA [auth i]	SCOP2B Superfamily	Ribosomal protein L36e	8053119	3002161	SCOP2B (2022-06-29)
SA [auth p]	SCOP2B Superfamily	Zn-binding ribosomal proteins	8101435	3001320	SCOP2B (2022-06-29)
UA [auth u]	SCOP2B Superfamily	Ribosomal protein L1p/L10e-like	8065344	3001911	SCOP2B (2022-06-29)
CB [auth FF]	SCOP2B Superfamily	Ribosomal protein S7	8066001	3000799	SCOP2B (2022-06-29)
IB [auth LL]	SCOP2B Superfamily	Ribosomal S17 N-terminal domain-like	8052708	3002138	SCOP2B (2022-06-29)
IB [auth LL]	SCOP2B Superfamily	Nucleic acid-binding proteins	8052707	3000135	SCOP2B (2022-06-29)
JB [auth MM]	SCOP2B Superfamily	L30e-like	8063980	3001739	SCOP2B (2022-06-29)
KB [auth NN]	SCOP2B Superfamily	Homeodomain-like	8052970	3000001	SCOP2B (2022-06-29)
KB [auth NN]	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8052971	3001284	SCOP2B (2022-06-29)
PB [auth SS]	SCOP2B Superfamily	S13-like H2TH domain	8101439	3000053	SCOP2B (2022-06-29)
TB [auth WW]	SCOP2B Superfamily	Ribosomal protein S8	8079081	3000709	SCOP2B (2022-06-29)
WB [auth ZZ]	SCOP2B Superfamily	Winged helix DNA-binding domain	8090991	3000034	SCOP2B (2022-06-29)
ZB [auth cc]	SCOP2B Superfamily	Nucleic acid-binding proteins	8095265	3000135	SCOP2B (2022-06-29)
AC [auth dd]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8052584	3000068	SCOP2B (2022-06-29)
BC [auth ee]	SCOP2B Superfamily	Ribosomal protein S30e-like	8053455	3002190	SCOP2B (2022-06-29)
DC [auth gg]	SCOP2B Superfamily	WD40 repeat-like	8097816	3001694	SCOP2B (2022-06-29)
CA [auth Z]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8053047	3000334	SCOP2B (2022-06-29)
HA [auth e]	SCOP2B Superfamily	Ribosomal protein L32e	8102088	3000982	SCOP2B (2022-06-29)
OA [auth l]	SCOP2B Superfamily	Ribosomal protein L39e	8095597	3001756	SCOP2B (2022-06-29)
YA [auth BB]	SCOP2B Superfamily	Ribosomal S3Ae-like	8053216	3002166	SCOP2B (2022-06-29)
HB [auth KK]	SCOP2B Superfamily	Winged helix DNA-binding domain	8055720	3000034	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth B]	PF00297	e6mtcB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PF00297	ECOD (1.6)
G [auth C]	PF00573	e6mtcC1	A: a/b three-layered sandwiches	X: Ribosomal protein L4 (From Topology)	H: Ribosomal protein L4 (From Topology)	T: Ribosomal protein L4	F: PF00573	ECOD (1.6)
G [auth C]	PF14374	e6mtcC2	A: extended segments	X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)	H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)	T: C-terminal helical region in 60S ribosomal protein L4 (L4p)	F: PF14374	ECOD (1.6)
H [auth D]	PF14204,PF17144	e6mtcD1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF14204,PF17144	ECOD (1.6)
J [auth F]	PF00327,PF08079	e6mtcF1	A: a+b two layers	X: Ribosomal protein L30p/L7e (From Topology)	H: Ribosomal protein L30p/L7e (From Topology)	T: Ribosomal protein L30p/L7e	F: PF00327,PF08079	ECOD (1.6)
K [auth G]	PF01248	e6mtcG1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: PF01248	ECOD (1.6)
L [auth H]	PF00347	e6mtcH1	A: a+b two layers	X: Ribosomal protein L6 (From Topology)	H: Ribosomal protein L6 (From Topology)	T: Ribosomal protein L6	F: PF00347	ECOD (1.6)
M [auth I]	PF00252	e6mtcI1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Ribosomal protein L10e	F: PF00252	ECOD (1.6)
N [auth J]	PF00281,PF00673	e6mtcJ1	A: a+b two layers	X: Ribosomal protein L5 (From Topology)	H: Ribosomal protein L5 (From Topology)	T: Ribosomal protein L5	F: PF00281,PF00673	ECOD (1.6)
O [auth L]	PF01294	e6mtcL1	A: extended segments	X: RPL13 (From Topology)	H: RPL13 (From Topology)	T: RPL13	F: PF01294	ECOD (1.6)
Q [auth N]	PF00827	e6mtcN1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: PF00827	ECOD (1.6)
R [auth O]	PF00572	e6mtcO1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal protein L13 and L16-A (From Topology)	T: Ribosomal protein L13 and L16-A	F: PF00572	ECOD (1.6)
U [auth R]	PF01280	e6mtcR1	A: alpha arrays	X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)	H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)	T: Ribosomal protein L19 (L19e) N-terminal domain	F: PF01280	ECOD (1.6)
U [auth R]	PF01280	e6mtcR2	A: alpha bundles	X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)	H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)	T: Ribosomal protein L19 (L19e) C-terminal domain	F: PF01280	ECOD (1.6)
W [auth T]	PF01157	e6mtcT1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF01157	ECOD (1.6)
X [auth U]	PF01776	e6mtcU1	A: a+b two layers	X: Ribosomal protein L22e (From Topology)	H: Ribosomal protein L22e (From Topology)	T: Ribosomal protein L22e	F: PF01776	ECOD (1.6)
Y [auth V]	PF00238	e6mtcV1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: PF00238	ECOD (1.6)
AA [auth X]	PF00276,PF03939	e6mtcX1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: PF00276,PF03939	ECOD (1.6)
BA [auth Y]	PF16906	e6mtcY1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF16906	ECOD (1.6)
DA [auth a]	PF00828	e6mtca1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal proteins L15p and L18e (From Topology)	T: Ribosomal proteins L15p and L18e	F: PF00828	ECOD (1.6)
EA [auth b]	PF01779	e6mtcb1	A: extended segments	X: RPL29 (From Topology)	H: RPL29 (From Topology)	T: RPL29	F: PF01779	ECOD (1.6)
FA [auth c]	PF01248	e6mtcc1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: PF01248	ECOD (1.6)
GA [auth d]	PF01198	e6mtcd1	A: a+b two layers	X: Ribosomal protein L31e-like	H: Ribosomal protein L31e/gp120 outer domain (From Topology)	T: Ribosomal protein L31e/gp120 outer domain	F: PF01198	ECOD (1.6)
IA [auth f]	PF01247	e6mtcf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PF01247	ECOD (1.6)
JA [auth g]	PF01199	e6mtcg1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: RPL34 (From Topology)	T: RPL34	F: PF01199	ECOD (1.6)
KA [auth h]	PF00831	e6mtch1	A: alpha bundles	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p) (From Topology)	T: Ribosomal protein L29 (L29p)	F: PF00831	ECOD (1.6)
LA [auth i]	PF01158	e6mtci1	A: alpha arrays	X: 60S ribosomal protein rpL36 (L36e) (From Topology)	H: 60S ribosomal protein rpL36 (L36e) (From Topology)	T: 60S ribosomal protein rpL36 (L36e)	F: PF01158	ECOD (1.6)
MA [auth j]	PF01907	e6mtcj1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01907	ECOD (1.6)
NA [auth k]	PF01781	e6mtck1	A: a+b two layers	X: SRP9/14-like	H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)	T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related	F: PF01781	ECOD (1.6)
PA [auth m]	PF01020	e6mtcm1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01020	ECOD (1.6)
QA [auth n]	PF05162	e6mtcn1	A: extended segments	X: Ribosomal protein L41-A (From Topology)	H: Ribosomal protein L41-A (From Topology)	T: Ribosomal protein L41-A	F: PF05162	ECOD (1.6)
RA [auth o]	PF00935	e6mtco1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF00935	ECOD (1.6)
SA [auth p]	PF01780	e6mtcp1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01780	ECOD (1.6)
TA [auth r]	PF01778	e6mtcr1	A: a+b two layers	X: RPL28 (From Topology)	H: RPL28 (From Topology)	T: RPL28	F: PF01778	ECOD (1.6)
UA [auth u]	PF00687	e6mtcu2	A: a+b two layers	X: a+b domain in Ribosomal protein L1 (From Topology)	H: a+b domain in Ribosomal protein L1 (From Topology)	T: a+b domain in Ribosomal protein L1	F: PF00687	ECOD (1.6)
UA [auth u]	PF00687	e6mtcu1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Rossmann-like domain in Ribosomal protein L1 (From Topology)	T: Rossmann-like domain in Ribosomal protein L1	F: PF00687	ECOD (1.6)
VA [auth v]	PF04836,PF05004	e6mtcv1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04836,PF05004	ECOD (1.6)
XA [auth AA]	PF00318	e6mtcAA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Ribosomal protein S2/SIS domain (From Topology)	T: Ribosomal protein S2/SIS domain	F: PF00318	ECOD (1.6)
ZA [auth CC]	PF03719	e6mtcCC3	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF03719	ECOD (1.6)
ZA [auth CC]	PF00333	e6mtcCC2	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: PF00333	ECOD (1.6)
ZA [auth CC]	PF00333	e6mtcCC1	A: extended segments	X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)	H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)	T: N-terminal region in 40S ribosomal protein rpS2 (S5p)	F: PF00333	ECOD (1.6)
AB [auth DD]	PF00189	e6mtcDD2	A: a+b two layers	X: T-fold	H: Ribosomal protein S3-C (From Topology)	T: Ribosomal protein S3-C	F: PF00189	ECOD (1.6)
AB [auth DD]	PF07650	e6mtcDD1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: KH-domains	T: Prokaryotic type KH domain (KH-domain type II)	F: PF07650	ECOD (1.6)
CB [auth FF]	PF00177	e6mtcFF1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: PF00177	ECOD (1.6)
EB [auth HH]	PF01251	e6mtcHH1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: 40S ribosomal protein S7-A (From Topology)	T: 40S ribosomal protein S7-A	F: PF01251	ECOD (1.6)
FB [auth II]	PF01201	e6mtcII1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: PF01201	ECOD (1.6)
GB [auth JJ]	PF00163,PF01479	e6mtcJJ1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF00163,PF01479	ECOD (1.6)
IB [auth LL]	PF00366,PF16205	e6mtcLL1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00366,PF16205	ECOD (1.6)
JB [auth MM]	PF01248	e6mtcMM1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: PF01248	ECOD (1.6)
KB [auth NN]	PF08069	e6mtcNN2	A: alpha arrays	X: HTH	H: 40S ribosomal protein S13 N-terminal domain (From Topology)	T: 40S ribosomal protein S13 N-terminal domain	F: PF08069	ECOD (1.6)
KB [auth NN]	PF00312	e6mtcNN1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: PF00312	ECOD (1.6)
LB [auth OO]	PF00411	e6mtcOO1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00411	ECOD (1.6)
MB [auth PP]	PF00203	e6mtcPP1	A: a+b two layers	X: Ribosomal protein S19 (From Topology)	H: Ribosomal protein S19 (From Topology)	T: Ribosomal protein S19	F: PF00203	ECOD (1.6)
OB [auth RR]	PF00833	e6mtcRR1	A: alpha arrays	X: HTH	H: HTH	T: FF domain	F: PF00833	ECOD (1.6)
PB [auth SS]	PF00416	e6mtcSS1	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: PF00416	ECOD (1.6)
QB [auth TT]	PF01090	e6mtcTT1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01090	ECOD (1.6)
RB [auth UU]	PF00338	e6mtcUU1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S10 (From Topology)	T: Ribosomal protein S10	F: PF00338	ECOD (1.6)
SB [auth VV]	PF01249	e6mtcVV1	A: a+b two layers	X: 40S ribosomal protein rpS21 (S21e) (From Topology)	H: 40S ribosomal protein rpS21 (S21e) (From Topology)	T: 40S ribosomal protein rpS21 (S21e)	F: PF01249	ECOD (1.6)
TB [auth WW]	PF00410	e6mtcWW2	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: PF00410	ECOD (1.6)
TB [auth WW]	PF00410	e6mtcWW1	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: PF00410	ECOD (1.6)
UB [auth XX]	PF00164	e6mtcXX1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00164	ECOD (1.6)
WB [auth ZZ]	PF03297	e6mtcZZ1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF03297	ECOD (1.6)
XB [auth aa]	PF01283	e6mtcaa1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF01283	ECOD (1.6)
YB [auth bb]	PF01667	e6mtcbb1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01667	ECOD (1.6)
ZB [auth cc]	PF01200	e6mtccc1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF01200	ECOD (1.6)
AC [auth dd]	PF00253	e6mtcdd1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF00253	ECOD (1.6)
BC [auth ee]	PF04758	e6mtcee1	A: extended segments	X: 40S ribosomal protein S30 (S30e) (From Topology)	H: 40S ribosomal protein S30 (S30e) (From Topology)	T: 40S ribosomal protein S30 (S30e)	F: PF04758	ECOD (1.6)
CC [auth ff]	PF01599	e6mtcff1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01599	ECOD (1.6)
DC [auth gg]	PF00400	e6mtcgg1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
P [auth M]	PF00467,PF01929	e6mtcM1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF01929	ECOD (1.6)
S [auth P]	PF00237	e6mtcP1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Ribosomal protein L22 (From Topology)	T: Ribosomal protein L22	F: PF00237	ECOD (1.6)
T [auth Q]	PF17135	e6mtcQ1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal proteins L15p and L18e (From Topology)	T: Ribosomal proteins L15p and L18e	F: PF17135	ECOD (1.6)
V [auth S]	F_UNCLASSIFIED	e6mtcS2	A: a+b two layers	X: GP2-like	H: RplX-like (From Topology)	T: RplX-like	F: F_UNCLASSIFIED	ECOD (1.6)
V [auth S]	PF01775	e6mtcS1	A: a+b two layers	X: GP2-like	H: RplX-like (From Topology)	T: RplX-like	F: PF01775	ECOD (1.6)
Z [auth W]	PF01246	e6mtcW1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF01246	ECOD (1.6)
CA [auth Z]	PF00467,PF01777	e6mtcZ1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF01777	ECOD (1.6)
HA [auth e]	PF01655	e6mtce1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal protein L32e (From Topology)	T: Ribosomal protein L32e	F: PF01655	ECOD (1.6)
OA [auth l]	PF00832	e6mtcl1	A: extended segments	X: Ribosomal protein L39e (From Topology)	H: Ribosomal protein L39e (From Topology)	T: Ribosomal protein L39e	F: PF00832	ECOD (1.6)
E [auth A]	PF00181	e6mtcA1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00181	ECOD (1.6)
E [auth A]	PF03947	e6mtcA2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF03947	ECOD (1.6)
YA [auth BB]	PF01015	e6mtcBB1	A: beta barrels	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain (From Topology)	T: 40S ribosomal protein S3A N-terminal domain	F: PF01015	ECOD (1.6)
YA [auth BB]	PF01015	e6mtcBB2	A: a+b two layers	X: T-fold	H: 40S ribosomal protein S3A C-terminal domain (From Topology)	T: 40S ribosomal protein S3A C-terminal domain	F: PF01015	ECOD (1.6)
BB [auth EE]	PF00900	e6mtcEE2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00900	ECOD (1.6)
BB [auth EE]	PF00467,PF16121	e6mtcEE1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF16121	ECOD (1.6)
BB [auth EE]	PF00900,PF01479,PF08071	e6mtcEE3	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF00900,PF01479,PF08071	ECOD (1.6)
DB [auth GG]	PF01092	e6mtcGG1	A: beta barrels	X: Ribosomal protein L25-like	H: Ribosomal protein L25-like (From Topology)	T: Ribosomal protein L25-like	F: PF01092	ECOD (1.6)
HB [auth KK]	PF03501	e6mtcKK1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF03501	ECOD (1.6)
NB [auth QQ]	PF00380	e6mtcQQ1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF00380	ECOD (1.6)
VB [auth YY]	PF01282	e6mtcYY1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: PF01282	ECOD (1.6)
I [auth E]	PF01159,PF03868	e6mtcE1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF01159,PF03868	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F [auth B]	PF00297	Ribosomal protein L3 (Ribosomal_L3)	Ribosomal protein L3	-	Family
G [auth C]	PF14374	60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)	60S ribosomal protein L4 C-terminal domain	This family is found at the very C-terminal of 60 ribosomal L4 proteins.	Domain
G [auth C]	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
H [auth D]	PF17144	Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)	Ribosomal large subunit proteins 60S L5, and 50S L18	-	Family
H [auth D]	PF14204	Ribosomal L18 C-terminal region (Ribosomal_L18_c)	Ribosomal L18 C-terminal region	This domain is the C-terminal end of ribosomal L18/L5 proteins.	Domain
J [auth F]	PF08079	Ribosomal L30 N-terminal domain (Ribosomal_L30_N)	Ribosomal L30 N-terminal domain	This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].	Domain
J [auth F]	PF00327	Ribosomal protein L30p/L7e (Ribosomal_L30)	Ribosomal protein L30p/L7e	This family includes prokaryotic L30 and eukaryotic L7.	Domain
L [auth H]	PF00347	Ribosomal protein L6 (Ribosomal_L6)	Ribosomal protein L6	-	Domain
M [auth I]	PF00252	Ribosomal protein L16p/L10e (Ribosomal_L16)	Ribosomal protein L16p/L10e	-	Domain
N [auth J]	PF00281	Ribosomal protein L5 (Ribosomal_L5)	Ribosomal protein L5	-	Domain
N [auth J]	PF00673	ribosomal L5P family C-terminus (Ribosomal_L5_C)	ribosomal L5P family C-terminus	This region is found associated with Pfam:PF00281.	Domain
Q [auth N]	PF00827	Ribosomal L15 (Ribosomal_L15e)	Ribosomal L15	-	Family
W [auth T]	PF01157	Ribosomal protein L21e (Ribosomal_L21e)	Ribosomal protein L21e	-	Family
Y [auth V]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e	-	Domain
BA [auth Y]	PF16906	Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)	Ribosomal proteins L26 eukaryotic, L24P archaeal	-	Family
BA [auth Y]	PF00467	KOW motif (KOW)	KOW motif	-	Family
DA [auth a]	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	-	Family
FA [auth c]	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain
GA [auth d]	PF01198	Ribosomal protein L31e (Ribosomal_L31e)	Ribosomal protein L31e	-	Family
IA [auth f]	PF01247	Ribosomal protein L35Ae (Ribosomal_L35Ae)	Ribosomal protein L35Ae	-	Domain
KA [auth h]	PF00831	Ribosomal L29 protein (Ribosomal_L29)	Ribosomal L29 protein	-	Family
LA [auth i]	PF01158	Ribosomal protein L36e (Ribosomal_L36e)	Ribosomal protein L36e	-	Family
MA [auth j]	PF01907	Ribosomal protein L37e (Ribosomal_L37e)	Ribosomal protein L37e	-	Family
RA [auth o]	PF00935	Ribosomal protein L44 (Ribosomal_L44)	Ribosomal protein L44	-	Family
SA [auth p]	PF01780	Ribosomal L37ae protein family (Ribosomal_L37ae)	Ribosomal L37ae protein family	-	Family
TA [auth r]	PF01778	Ribosomal L28e protein family (Ribosomal_L28e)	Ribosomal L28e protein family	-	Family
UA [auth u]	PF00687	Ribosomal protein L1p/L10e family (Ribosomal_L1)	Ribosomal protein L1p/L10e family	This family includes prokaryotic L1 and eukaryotic L10.	Domain
CB [auth FF]	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
EB [auth HH]	PF01251	Ribosomal protein S7e (Ribosomal_S7e)	Ribosomal protein S7e	-	Family
GB [auth JJ]	PF00163	Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)	Ribosomal protein S4/S9 N-terminal domain	-	Family
GB [auth JJ]	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
IB [auth LL]	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17	-	Domain
IB [auth LL]	PF16205	Ribosomal_S17 N-terminal (Ribosomal_S17_N)	Ribosomal_S17 N-terminal	-	Family
JB [auth MM]	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain
KB [auth NN]	PF08069	Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)	Ribosomal S13/S15 N-terminal domain	This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].	Domain
KB [auth NN]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15	-	Domain
MB [auth PP]	PF00203	Ribosomal protein S19 (Ribosomal_S19)	Ribosomal protein S19	-	Domain
OB [auth RR]	PF00833	Ribosomal S17 (Ribosomal_S17e)	Ribosomal S17	-	Family
PB [auth SS]	PF00416	Ribosomal protein S13/S18 (Ribosomal_S13)	Ribosomal protein S13/S18	-	Family
TB [auth WW]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8	-	Domain
WB [auth ZZ]	PF03297	S25 ribosomal protein (Ribosomal_S25)	S25 ribosomal protein	-	Family
ZB [auth cc]	PF01200	Ribosomal protein S28e (Ribosomal_S28e)	Ribosomal protein S28e	-	Family
AC [auth dd]	PF00253	Ribosomal protein S14p/S29e (Ribosomal_S14)	Ribosomal protein S14p/S29e	-	Family
BC [auth ee]	PF04758	Ribosomal protein S30 (Ribosomal_S30)	Ribosomal protein S30	-	Family
CC [auth ff]	PF01599	Ribosomal protein S27a (Ribosomal_S27)	Ribosomal protein S27a	This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...	This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].	Domain
DC [auth gg]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
P [auth M]	PF01929	Ribosomal protein L14 (Ribosomal_L14e)	Ribosomal protein L14	-	Family
S [auth P]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
CA [auth Z]	PF01777	Ribosomal L27e protein family (Ribosomal_L27e)	Ribosomal L27e protein family	-	Family
CA [auth Z]	PF00467	KOW motif (KOW)	KOW motif	-	Family
HA [auth e]	PF01655	Ribosomal protein L32 (Ribosomal_L32e)	Ribosomal protein L32	-	Family
OA [auth l]	PF00832	Ribosomal L39 protein (Ribosomal_L39)	Ribosomal L39 protein	-	Family
E [auth A]	PF03947	Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)	Ribosomal Proteins L2, C-terminal domain	-	Domain
E [auth A]	PF00181	Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)	Ribosomal Proteins L2, RNA binding domain	-	Domain
YA [auth BB]	PF01015	Ribosomal S3Ae family (Ribosomal_S3Ae)	Ribosomal S3Ae family	-	Family
DB [auth GG]	PF01092	Ribosomal protein S6e (Ribosomal_S6e)	Ribosomal protein S6e	-	Family
HB [auth KK]	PF03501	Plectin/S10 domain (S10_plectin)	Plectin/S10 domain	This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.	Domain
I [auth E]	PF03868	Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)	Ribosomal protein L6, N-terminal domain	-	Domain
I [auth E]	PF01159	Ribosomal protein L6e (Ribosomal_L6e)	Ribosomal protein L6e	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth 5]	28S rRNA	-	-	-
D [auth 8]	5.8S rRNA	-	-	-
F [auth B]	60S ribosomal protein L3	-	-	-
G [auth C]	60S ribosomal protein L4	-	-	-
H [auth D]	60S ribosomal protein L5	-	-	-
J [auth F]	60S ribosomal protein L7	-	-	-
K [auth G]	60S ribosomal protein L7a	-	-	-
L [auth H]	60S ribosomal protein L9	-	-	-
M [auth I]	60S ribosomal protein L10	-	-	-
N [auth J]	60S ribosomal protein L11	-	-	-
O [auth L]	60S ribosomal protein L13	-	-	-
Q [auth N]	60S Ribosomal protein L15	-	-	-
R [auth O]	60S ribosomal protein L13a	-	-	-
U [auth R]	60S ribosomal protein L19	-	-	-
W [auth T]	60S ribosomal protein L21	-	-	-
X [auth U]	60S ribosomal protein L22	-	-	-
Y [auth V]	60S ribosomal protein L23	-	-	-
AA [auth X]	60S ribosomal protein L23a	-	-	-
BA [auth Y]	60S ribosomal protein L26	-	-	-
DA [auth a]	60S ribosomal protein L27a	-	-	-
EA [auth b]	60S ribosomal protein L29	-	-	-
FA [auth c]	60S ribosomal protein L30	-	-	-
GA [auth d]	60S ribosomal protein L31	-	-	-
IA [auth f]	60S ribosomal protein L35a	-	-	-
JA [auth g]	60S ribosomal protein L34	-	-	-
KA [auth h]	60S ribosomal protein L35	-	-	-
LA [auth i]	60S ribosomal protein L36	-	-	-
MA [auth j]	60S ribosomal protein L37	-	-	-
NA [auth k]	60S ribosomal protein L38	-	-	-
PA [auth m]	60S ribosomal protein L40	-	-	-
QA [auth n]	60S ribosomal protein L41	-	-	-
RA [auth o]	60S ribosomal protein L36a	-	-	-
SA [auth p]	60S ribosomal protein L37a	-	-	-
TA [auth r]	60S ribosomal protein L28	-	-	-
UA [auth u]	60S ribosomal protein L10a	-	-	-
VA [auth v]	Interferon-related developmental regulator 2	-	-	-
WA [auth 9]	18S rRNA	-	-	-
XA [auth AA]	40S ribosomal protein SA	-	-	-
ZA [auth CC]	40S ribosomal protein S2	-	-	-
AB [auth DD]	40S ribosomal protein S3	-	-	-
CB [auth FF]	40S ribosomal protein S5	-	-	-
EB [auth HH]	40S ribosomal protein S7	-	-	-
FB [auth II]	40S ribosomal protein S8	-	-	-
GB [auth JJ]	40S ribosomal protein S9	-	-	-
IB [auth LL]	40S ribosomal protein S11	-	-	-
JB [auth MM]	40S ribosomal protein S12	-	-	-
KB [auth NN]	40S ribosomal protein S13	-	-	-
LB [auth OO]	40S ribosomal protein S14	-	-	-
MB [auth PP]	40S ribosomal protein S15	-	-	-
OB [auth RR]	40S ribosomal protein S17	-	-	-
PB [auth SS]	40S ribosomal protein S18	-	-	-
QB [auth TT]	40S ribosomal protein S19	-	-	-
RB [auth UU]	40S ribosomal protein S20	-	-	-
SB [auth VV]	40S ribosomal protein S21	-	-	-
TB [auth WW]	40S ribosomal protein S15a	-	-	-
UB [auth XX]	40S ribosomal protein S23	-	-	-
WB [auth ZZ]	40S ribosomal protein S25	-	-	-
XB [auth aa]	40S ribosomal protein S26	-	-	-
YB [auth bb]	40S ribosomal protein S27	-	-	-
ZB [auth cc]	40S ribosomal protein S28	-	-	-
AC [auth dd]	40S ribosomal protein S29	-	-	-
BC [auth ee]	40S ribosomal protein S30	-	-	-
CC [auth ff]	40S ribosomal protein S27a	-	-	-
DC [auth gg]	Receptor of activated protein C kinase 1	-	-	-
A [auth 4]	Z-site tRNA	-	-	-
P [auth M]	60S ribosomal protein L14	-	-	-
S [auth P]	60S ribosomal protein L17	-	-	-
T [auth Q]	60S ribosomal protein L18	-	-	-
V [auth S]	60S ribosomal protein L18a	-	-	-
Z [auth W]	60S ribosomal protein L24	-	-	-
CA [auth Z]	60S ribosomal protein L27	-	-	-
C [auth 7]	5S rRNA	-	-	-
HA [auth e]	60S ribosomal protein L32	-	-	-
OA [auth l]	60S ribosomal protein L39	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
E [auth A]	60S ribosomal protein L8	-	-	-
YA [auth BB]	40S ribosomal protein S3a	-	-	-
BB [auth EE]	40S ribosomal protein S4, X isoform	-	-	-
DB [auth GG]	40S ribosomal protein S6	-	-	-
HB [auth KK]	40S ribosomal protein S10	-	-	-
NB [auth QQ]	40S ribosomal protein S16	-	-	-
VB [auth YY]	40S ribosomal protein S24	-	-	-
I [auth E]	60S ribosomal protein L6	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
OA [auth l]	IPR023626	Large ribosomal subunit protein eL39 domain superfamily	Homologous Superfamily
OA [auth l]	IPR000077	Large ribosomal subunit protein eL39	Family
OA [auth l]	IPR020083	Large ribosomal subunit protein eL39, conserved site	Conserved Site
HB [auth KK]	IPR037447	Small ribosomal subunit protein eS10	Family
HB [auth KK]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
HB [auth KK]	IPR005326	Plectin/eS10, N-terminal	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth 5]	1MA	Parent Component: A
B [auth 5]	2MG	Parent Component: G
B [auth 5]	5MC	Parent Component: C
B [auth 5]	5MU	Parent Component: U
B [auth 5]	6MZ	Parent Component: A
B [auth 5]	7MG	Parent Component: G
B [auth 5]	A2M	Parent Component: A
B [auth 5]	B8H	Parent Component: U
B [auth 5]	B8K	Parent Component: G
B [auth 5]	B8Q	Parent Component: C
B [auth 5]	B8T	Parent Component: C
B [auth 5]	B8W	Parent Component: G
B [auth 5]	B9B	Parent Component: G
B [auth 5]	B9H	Parent Component: C
B [auth 5]	BGH	Parent Component: G
B [auth 5]	E6G	Parent Component: G
B [auth 5]	E7G	Parent Component: G
B [auth 5]	I4U	Parent Component: U
B [auth 5]	M7A	Parent Component: A
B [auth 5]	MHG	Parent Component: G
B [auth 5]	OMC	Parent Component: C
B [auth 5]	OMG	Parent Component: G
B [auth 5]	OMU	Parent Component: U
B [auth 5]	P4U	Parent Component: U
B [auth 5]	P7G	Parent Component: G
B [auth 5]	PSU	Parent Component: U
B [auth 5]	UR3	Parent Component: U
D [auth 8]	OMU	Parent Component: U
G [auth C]	MLZ	Parent Component: LYS RESID: AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085
PA [auth m]	MLZ	Parent Component: LYS RESID: AA0076 , AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085
WA [auth 9]	4AC	RESID: AA0076 , AA0076
WA [auth 9]	5MC	Parent Component: C RESID: AA0076 , AA0076
WA [auth 9]	5MU	Parent Component: U RESID: AA0076 , AA0076
WA [auth 9]	6MZ	Parent Component: A RESID: AA0076 , AA0076
WA [auth 9]	A2M	Parent Component: A RESID: AA0076 , AA0076
WA [auth 9]	B8N	RESID: AA0076 , AA0076
WA [auth 9]	B8Q	Parent Component: C
WA [auth 9]	E3C	Parent Component: C
WA [auth 9]	M7A	Parent Component: A RESID: AA0076 , AA0076
WA [auth 9]	MA6	Parent Component: A RESID: AA0076 , AA0076
WA [auth 9]	OMC	Parent Component: C RESID: AA0076 , AA0076
WA [auth 9]	OMG	Parent Component: G RESID: AA0076 , AA0076
WA [auth 9]	OMU	Parent Component: U RESID: AA0076 , AA0076
WA [auth 9]	PSU	Parent Component: U RESID: AA0076 , AA0076
WA [auth 9]	UR3	Parent Component: U RESID: AA0076 , AA0076