6R84

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth i]SCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
G [auth K]SCOP2B SuperfamilyL30e-like8063962 3001739 SCOP2B (2022-06-29)
H [auth k]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
K [auth M]SCOP2 FamilyRibosomal protein L58099391 4001498 SCOP2 (2022-06-29)
K [auth M]SCOP2 SuperfamilyRL5-like8099392 3001709 SCOP2 (2022-06-29)
R [auth Q]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
V [auth T]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
Y [auth W]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
FA [auth Z]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
IA [auth b]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
KA [auth c]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8077127 3001045 SCOP2B (2022-06-29)
LA [auth D]SCOP2B SuperfamilyZn-binding ribosomal proteins8103126 3001320 SCOP2B (2022-06-29)
MA [auth d]SCOP2B SuperfamilyRibosomal protein L29e8053045 3002157 SCOP2B (2022-06-29)
PA [auth F]SCOP2B SuperfamilyTranslational proteins8078363 3000811 SCOP2B (2022-06-29)
RA [auth G]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052815 3002143 SCOP2B (2022-06-29)
RA [auth G]SCOP2B SuperfamilyRibosomal protein L48052816 3001146 SCOP2B (2022-06-29)
TA [auth H]SCOP2B SuperfamilyTranslational machinery components8052875 3000571 SCOP2B (2022-06-29)
UA [auth h]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
WA [auth L]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8098448 3001911 SCOP2B (2022-06-29)
J [auth l]SCOP2B SuperfamilyZn-binding ribosomal proteins8080044 3001320 SCOP2B (2022-06-29)
L [auth m]SCOP2B SuperfamilyRibosomal L38e protein-like8053562 3002206 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyRibosomal protein L13e-like8053159 3002162 SCOP2B (2022-06-29)
N [auth n]SCOP2B SuperfamilyRibosomal protein L39e8078549 3001756 SCOP2B (2022-06-29)
Q [auth p]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
S [auth 5]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
T [auth S]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
U [auth s]SCOP2B SuperfamilyRibosomal protein L16p/L10e8079407 3000884 SCOP2B (2022-06-29)
BA [auth x]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
C [auth X]SCOP2B SuperfamilyPentein8036230 3000640 SCOP2B (2022-06-29)
GA [auth a]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
OA [auth e]SCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)
VA [auth I]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
E [auth J]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
E [auth J]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth i]PF01199e6r84i1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
F [auth j]PF00831e6r84j1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
G [auth K]PF01248e6r84K1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
H [auth k]PF01158e6r84k1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
I [auth 7]PF00347e6r8472 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
K [auth M]PF00281,PF00673e6r84M1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
OPF00467,PF01929e6r84O1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
R [auth Q]PF00572e6r84Q1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
V [auth T]PF01280e6r84T1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
V [auth T]PF01280e6r84T2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
W [auth U]F_UNCLASSIFIEDe6r84U2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
W [auth U]PF01775e6r84U1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
X [auth V]PF01157e6r84V1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
Y [auth W]PF01776e6r84W1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
Z [auth P]PF00298e6r84P1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
Z [auth P]PF03946e6r84P2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
AA [auth r]PF00466e6r84r1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
DA [auth Y]PF01246e6r84Y1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
FA [auth Z]PF00276,PF03939e6r84Z1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
IA [auth b]PF01777e6r84b1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
KA [auth c]PF00828e6r84c1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
LA [auth D]PF01780e6r84D1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
MA [auth d]PF01779e6r84d1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
NA [auth E]PF00181e6r84E2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
NA [auth E]PF03947e6r84E1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
PA [auth F]PF00297e6r84F1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
RA [auth G]PF00573e6r84G3 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
RA [auth G]PF14374e6r84G2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
SA [auth g]PF01655e6r84g1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
TA [auth H]PF14204,PF17144e6r84H1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
UA [auth h]PF01247e6r84h1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
WA [auth L]PF00687e6r84L2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
WA [auth L]PF00687e6r84L1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
J [auth l]PF01907e6r84l1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
L [auth m]PF01781e6r84m1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
M [auth N]PF01294e6r84N1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
N [auth n]PF00832e6r84n1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
P [auth o]PF01020e6r84o1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
Q [auth p]PF00827e6r84p1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
S [auth 5]PF00237e6r8451 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
T [auth S]PF17135e6r84S1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
U [auth s]PF00252e6r84s1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
BA [auth x]PF00238e6r84x1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
C [auth X]PF01912e6r84X1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
GA [auth a]PF16906e6r84a1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
JA [auth C]PF00935e6r84C1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
OA [auth e]PF01248e6r84e1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
QA [auth f]PF01198e6r84f1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
VA [auth I]PF01159e6r84I1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
E [auth J]PF00327,PF08079e6r84J1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth R]PF18826Bacteroidetes VLRF1 release factor (bVLRF1)Bacteroidetes VLRF1 release factorArchaeo-eukaryotic release factor domain family belonging to the VLRF1 clade observed primarily in the bacteroidetes bacterial lineage. Contains a conserved glutamine residue in the release factor catalytic loop, suggesting it functions as an active ...Archaeo-eukaryotic release factor domain family belonging to the VLRF1 clade observed primarily in the bacteroidetes bacterial lineage. Contains a conserved glutamine residue in the release factor catalytic loop, suggesting it functions as an active peptidyl-tRNA hydrolase at the ribosome [1].
Domain
D [auth i]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
F [auth j]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
G [auth K]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
H [auth k]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
I [auth 7]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
K [auth M]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
K [auth M]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
PF00467KOW motif (KOW)KOW motif- Family
R [auth Q]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
V [auth T]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
W [auth U]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
X [auth V]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
Y [auth W]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
Z [auth P]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
Z [auth P]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
AA [auth r]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
DA [auth Y]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
FA [auth Z]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
FA [auth Z]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
IA [auth b]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
KA [auth c]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
LA [auth D]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
MA [auth d]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
NA [auth E]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
NA [auth E]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PA [auth F]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
RA [auth G]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
RA [auth G]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
SA [auth g]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
TA [auth H]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
TA [auth H]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
UA [auth h]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
WA [auth L]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
PF12848ABC transporter (ABC_tran_Xtn)ABC transporterThis domain is an extension of some members of Pfam:PF00005 and other ABC-transporter families.Domain
PF00005ABC transporter (ABC_tran)ABC transporterABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.
Domain
J [auth l]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
L [auth m]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
M [auth N]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
N [auth n]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
P [auth o]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
Q [auth p]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
S [auth 5]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
T [auth S]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
U [auth s]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
BA [auth x]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
C [auth X]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
GA [auth a]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
GA [auth a]PF00467KOW motif (KOW)KOW motif- Family
JA [auth C]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
OA [auth e]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
QA [auth f]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
VA [auth I]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
E [auth J]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
E [auth J]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth R]Protein VMS1,Vms1,Protein VMS1,Vms1
D [auth i]60S ribosomal protein L34-A
F [auth j]60S ribosomal protein L35-A
G [auth K]60S ribosomal protein L8-A
H [auth k]60S ribosomal protein L36-A
I [auth 7]60S ribosomal protein L9-A
K [auth M]60S ribosomal protein L11-B
60S ribosomal protein L14-A
R [auth Q]60S ribosomal protein L16-A
V [auth T]60S ribosomal protein L19-A
W [auth U]60S ribosomal protein L20-A
X [auth V]60S ribosomal protein L21-A
Y [auth W]60S ribosomal protein L22-A
Z [auth P]60S ribosomal protein L12-A
AA [auth r]60S acidic ribosomal protein P0
CA [auth 3]5S rRNA---
DA [auth Y]60S ribosomal protein L24-A
FA [auth Z]60S ribosomal protein L25
HA [auth B]tRNA-Ala---
IA [auth b]60S ribosomal protein L27-A
KA [auth c]60S ribosomal protein L28
LA [auth D]60S ribosomal protein L43-A
MA [auth d]60S ribosomal protein L29
NA [auth E]60S ribosomal protein L2-A
PA [auth F]60S ribosomal protein L3
RA [auth G]60S ribosomal protein L4-A
SA [auth g]60S ribosomal protein L32
TA [auth H]60S ribosomal protein L5
UA [auth h]60S ribosomal protein L33-A
WA [auth L]60S ribosomal protein L1-A
XA [auth 1]25S rRNA---
ABC transporter ATP-binding protein ARB1
J [auth l]60S ribosomal protein L37-A
L [auth m]60S ribosomal protein L38
M [auth N]60S ribosomal protein L13-A
N [auth n]60S ribosomal protein L39
P [auth o]Ubiquitin-60S ribosomal protein L40
Q [auth p]60S ribosomal protein L15-A
S [auth 5]60S ribosomal protein L17-A
T [auth S]60S ribosomal protein L18-A
U [auth s]60S ribosomal protein L10
BA [auth x]60S ribosomal protein L23-A
C [auth X]Eukaryotic translation initiation factor 6
EA [auth 4]5.8S rRNA---
GA [auth a]60S ribosomal protein L26-A
JA [auth C]60S ribosomal protein L42-A
OA [auth e]60S ribosomal protein L30
QA [auth f]60S ribosomal protein L31-A
VA [auth I]60S ribosomal protein L6-A
E [auth J]60S ribosomal protein L7-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth R]IPR013087Zinc finger C2H2-typeDomain
B [auth R]IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily
B [auth R]IPR041175VLRF1/Vms1Domain
B [auth R]IPR047139tRNA endonuclease ANKZF1/VMS1Family
D [auth i]IPR008195Large ribosomal subunit protein eL34Family
D [auth i]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
F [auth j]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
F [auth j]IPR001854Large ribosomal subunit protein uL29Family
F [auth j]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
F [auth j]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
G [auth K]IPR001921Large ribosomal subunit protein eL8Family
G [auth K]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
G [auth K]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
G [auth K]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
G [auth K]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
H [auth k]IPR000509Large ribosomal subunit protein eL36Family
H [auth k]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
I [auth 7]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
I [auth 7]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
I [auth 7]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
I [auth 7]IPR000702Large ribosomal subunit protein uL6-likeFamily
K [auth M]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
K [auth M]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
K [auth M]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
K [auth M]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
K [auth M]IPR002132Large ribosomal subunit protein uL5Family
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR039660Large ribosomal subunit protein eL14Family
IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
IPR002784Large ribosomal subunit protein eL14 domainDomain
IPR005824KOWDomain
R [auth Q]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
R [auth Q]IPR005822Large ribosomal subunit protein uL13Family
R [auth Q]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
R [auth Q]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
V [auth T]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
V [auth T]IPR039547Large ribosomal subunit protein eL19Family
V [auth T]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
V [auth T]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
V [auth T]IPR000196Large ribosomal subunit protein eL19 domainDomain
V [auth T]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
W [auth U]IPR028877Large ribosomal subunit protein eL20Family
W [auth U]IPR023573Large ribosomal subunit protein eL20 domainDomain
W [auth U]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
X [auth V]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
X [auth V]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
X [auth V]IPR001147Large ribosomal subunit protein eL21Family
X [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth W]IPR002671Large ribosomal subunit protein eL22Family
Y [auth W]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Z [auth P]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
Z [auth P]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
Z [auth P]IPR000911Ribosomal protein uL11Family
Z [auth P]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
Z [auth P]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
Z [auth P]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
AA [auth r]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
AA [auth r]IPR001790Large ribosomal subunit protein uL10Family
AA [auth r]IPR030670Large ribosomal subunit protein uL10, eukaryotesFamily
AA [auth r]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
AA [auth r]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
DA [auth Y]IPR000988Large ribosomal subunit protein eL24-relatedFamily
DA [auth Y]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
DA [auth Y]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
FA [auth Z]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
FA [auth Z]IPR013025Large ribosomal subunit protein uL23-likeFamily
FA [auth Z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
FA [auth Z]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
FA [auth Z]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
IA [auth b]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
IA [auth b]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
IA [auth b]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IA [auth b]IPR001141Large ribosomal subunit protein eL27Family
IA [auth b]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
KA [auth c]IPR021131Large ribosomal subunit protein uL15/eL18Domain
KA [auth c]IPR030878Large ribosomal subunit protein uL15Family
KA [auth c]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
KA [auth c]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
LA [auth D]IPR002674Large ribosomal subunit protein eL43Family
LA [auth D]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
LA [auth D]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
MA [auth d]IPR002673Large ribosomal subunit protein eL29Family
NA [auth E]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
NA [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
NA [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth E]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
NA [auth E]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
NA [auth E]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
NA [auth E]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
NA [auth E]IPR002171Large ribosomal subunit protein uL2Family
PA [auth F]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
PA [auth F]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
PA [auth F]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
PA [auth F]IPR000597Large ribosomal subunit protein uL3Family
PA [auth F]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
RA [auth G]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
RA [auth G]IPR002136Large ribosomal subunit protein uL4Family
RA [auth G]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
RA [auth G]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
RA [auth G]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
SA [auth g]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
SA [auth g]IPR001515Large ribosomal subunit protein eL32Family
SA [auth g]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
TA [auth H]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
TA [auth H]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
UA [auth h]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
UA [auth h]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
UA [auth h]IPR001780Large ribosomal subunit protein eL33Family
UA [auth h]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
WA [auth L]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
WA [auth L]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
WA [auth L]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
WA [auth L]IPR002143Large ribosomal subunit protein uL1Family
WA [auth L]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
IPR003593AAA+ ATPase domainDomain
IPR017871ABC transporter-like, conserved siteConserved Site
IPR032781ABC-transporter extension domainDomain
IPR003439ABC transporter-like, ATP-binding domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
J [auth l]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
J [auth l]IPR001569Large ribosomal subunit protein eL37Family
J [auth l]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
J [auth l]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
L [auth m]IPR002675Large ribosomal subunit protein eL38Family
L [auth m]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
M [auth N]IPR001380Large ribosomal subunit protein eL13Family
M [auth N]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
N [auth n]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
N [auth n]IPR000077Large ribosomal subunit protein eL39Family
N [auth n]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
P [auth o]IPR019954Ubiquitin conserved siteConserved Site
P [auth o]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
P [auth o]IPR000626Ubiquitin-like domainDomain
P [auth o]IPR019956Ubiquitin domainDomain
P [auth o]IPR001975Large ribosomal subunit protein eL40 domainDomain
P [auth o]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
Q [auth p]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth p]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
Q [auth p]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
Q [auth p]IPR000439Large ribosomal subunit protein eL15Family
S [auth 5]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth 5]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth 5]IPR001063Large ribosomal subunit protein uL22Family
S [auth 5]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
T [auth S]IPR021131Large ribosomal subunit protein uL15/eL18Domain
T [auth S]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
T [auth S]IPR000039Large ribosomal subunit protein eL18Family
T [auth S]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
U [auth s]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
U [auth s]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
U [auth s]IPR016180Large ribosomal subunit protein uL16 domainDomain
U [auth s]IPR047873Large ribosomal subunit protein uL16Family
U [auth s]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
BA [auth x]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
BA [auth x]IPR000218Large ribosomal subunit protein uL14Family
BA [auth x]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
C [auth X]IPR002769Translation initiation factor IF6Family
GA [auth a]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
GA [auth a]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
GA [auth a]IPR005824KOWDomain
GA [auth a]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth a]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
GA [auth a]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
JA [auth C]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
JA [auth C]IPR000552Large ribosomal subunit protein eL42Family
OA [auth e]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
OA [auth e]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
OA [auth e]IPR039109Large ribosomal subunit protein eL30-likeFamily
OA [auth e]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
QA [auth f]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
QA [auth f]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
QA [auth f]IPR000054Large ribosomal subunit protein eL31Family
VA [auth I]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
VA [auth I]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
VA [auth I]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
VA [auth I]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
VA [auth I]IPR000915Large ribosomal subunit protein eL6Family
E [auth J]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
E [auth J]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
E [auth J]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
E [auth J]IPR039699Large ribosomal subunit protein uL30Family
E [auth J]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
E [auth J]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
E [auth J]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site