6SXO
Cryo-EM structure of the human Ebp1-ribosome complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth LX] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8095967 | 3000210 | SCOP2B (2022-06-29) |
F [auth LY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076756 | 3000334 | SCOP2B (2022-06-29) |
C [auth Lk] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053567 | 3002206 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth Lh] | PF00831 | e6sxoLh1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
E [auth LX] | PF00276,PF03939 | e6sxoLX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276,PF03939 | ECOD (1.6) |
F [auth LY] | PF16906 | e6sxoLY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16906 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6sxoA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00557 | e6sxoA2 | A: a+b duplicates or obligate multimers | X: Creatinase/aminopeptidase-like | H: Creatinase/aminopeptidase (From Topology) | T: Creatinase/aminopeptidase | F: PF00557 | ECOD (1.6) |
C [auth Lk] | PF01781 | e6sxoLk1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF01781 | ECOD (1.6) |
D [auth LR] | PF01280 | e6sxoLR1 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: PF01280 | ECOD (1.6) |
D [auth LR] | PF01280 | e6sxoLR2 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: PF01280 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth Lh] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
E [auth LX] | PF03939 | Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN) | Ribosomal protein L23, N-terminal domain | - | Family |
E [auth LX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
F [auth LY] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
F [auth LY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
PF00557 | Metallopeptidase family M24 (Peptidase_M24) | Metallopeptidase family M24 | This family contains metallopeptidases. It also contains non-peptidase homologues such as the N terminal domain of Spt16 which is a histone H3-H4 binding module [3]. | Domain | |
C [auth Lk] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
D [auth LR] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |