6SXO

Cryo-EM structure of the human Ebp1-ribosome complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth LX]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095967 3000210 SCOP2B (2022-06-29)
F [auth LY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076756 3000334 SCOP2B (2022-06-29)
C [auth Lk]SCOP2B SuperfamilyRibosomal L38e protein-like8053567 3002206 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth Lh]PF00831e6sxoLh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
E [auth LX]PF00276,PF03939e6sxoLX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
F [auth LY]PF16906e6sxoLY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
AF_UNCLASSIFIEDe6sxoA1 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
APF00557e6sxoA2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: Creatinase/aminopeptidase (From Topology)T: Creatinase/aminopeptidaseF: PF00557ECOD (1.6)
C [auth Lk]PF01781e6sxoLk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
D [auth LR]PF01280e6sxoLR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
D [auth LR]PF01280e6sxoLR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth Lh]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
E [auth LX]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
E [auth LX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
F [auth LY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
F [auth LY]PF00467KOW motif (KOW)KOW motif- Family
PF00557Metallopeptidase family M24 (Peptidase_M24)Metallopeptidase family M24This family contains metallopeptidases. It also contains non-peptidase homologues such as the N terminal domain of Spt16 which is a histone H3-H4 binding module [3].Domain
C [auth Lk]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
D [auth LR]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth Lh]60S ribosomal protein L35
E [auth LX]60S ribosomal protein L23a
F [auth LY]60S ribosomal protein L26
G [auth L5]28S ribosomal RNA including ES27L-B (2839-3265)---
H [auth L8]5.8S ribosomal RNA---
Proliferation-associated protein 2G4
C [auth Lk]60S ribosomal protein L38
D [auth LR]60S ribosomal protein L19

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth Lh]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
B [auth Lh]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
B [auth Lh]IPR001854Large ribosomal subunit protein uL29Family
B [auth Lh]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
E [auth LX]IPR019985Large ribosomal subunit protein uL23Family
E [auth LX]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
E [auth LX]IPR013025Large ribosomal subunit protein uL23-likeFamily
E [auth LX]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
E [auth LX]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
E [auth LX]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
F [auth LY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth LY]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
F [auth LY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
F [auth LY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
F [auth LY]IPR005824KOWDomain
F [auth LY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR047113Proliferation-associated protein 2G4/ARX1Family
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR018349Peptidase M24A, methionine aminopeptidase, subfamily 2, binding siteBinding Site
IPR036005Creatinase/aminopeptidase-likeHomologous Superfamily
IPR004545PA2G4 familyFamily
IPR000994Peptidase M24Domain
C [auth Lk]IPR002675Large ribosomal subunit protein eL38Family
C [auth Lk]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
D [auth LR]IPR039547Large ribosomal subunit protein eL19Family
D [auth LR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
D [auth LR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
D [auth LR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
D [auth LR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
D [auth LR]IPR000196Large ribosomal subunit protein eL19 domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth Lh]PharosP42766
E [auth LX]PharosP62750
F [auth LY]PharosP61254
PharosQ9UQ80
C [auth Lk]PharosP63173
D [auth LR]PharosP84098