Annotations: 6VFS

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth L]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
I [auth O]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
L [auth R]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
O [auth U]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
R [auth J]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
J [auth P]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
K [auth Q]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
M [auth S]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
N [auth T]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
P [auth H]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
Q [auth I]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
S [auth K]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
T [auth M]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
U [auth N]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth B]	ClpB_D2-small	e6vfsB1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
E [auth B]	Sigma54_activat	e6vfsB2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
A [auth E]	ClpB_D2-small	e6vfsE2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
A [auth E]	Sigma54_activat	e6vfsE1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
B [auth A]	ClpB_D2-small	e6vfsA1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
B [auth A]	Sigma54_activat	e6vfsA2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
C [auth F]	ClpB_D2-small	e6vfsF1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
C [auth F]	Sigma54_activat	e6vfsF2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
D [auth C]	ClpB_D2-small	e6vfsC1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
D [auth C]	Sigma54_activat	e6vfsC2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
F [auth D]	ClpB_D2-small	e6vfsD2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
F [auth D]	Sigma54_activat	e6vfsD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
H [auth L]	CLP_protease	e6vfsL1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
I [auth O]	CLP_protease	e6vfsO1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
L [auth R]	CLP_protease	e6vfsR1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
O [auth U]	CLP_protease	e6vfsU1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
R [auth J]	CLP_protease	e6vfsJ1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
J [auth P]	CLP_protease	e6vfsP1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
K [auth Q]	CLP_protease	e6vfsQ1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
M [auth S]	CLP_protease	e6vfsS1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
N [auth T]	CLP_protease	e6vfsT1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
P [auth H]	CLP_protease	e6vfsH1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
Q [auth I]	CLP_protease	e6vfsI1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
S [auth K]	CLP_protease	e6vfsK1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
T [auth M]	CLP_protease	e6vfsM1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
U [auth N]	CLP_protease	e6vfsN1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E [auth B]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
E [auth B]	1.10.8.60	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
A [auth E]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
A [auth E]	1.10.8.60	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
B [auth A]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
B [auth A]	1.10.8.60	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
C [auth F]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
C [auth F]	1.10.8.60	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
D [auth C]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
D [auth C]	1.10.8.60	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
F [auth D]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
F [auth D]	1.10.8.60	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
H [auth L]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
I [auth O]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
L [auth R]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
O [auth U]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
R [auth J]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
J [auth P]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
K [auth Q]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
M [auth S]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
N [auth T]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
P [auth H]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
Q [auth I]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
S [auth K]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
T [auth M]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
U [auth N]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	PF10431	C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)	C-terminal, D2-small domain, of ClpB protein	This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 ...	This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly [1]. The domain is associated with two Clp_N, Pfam:PF02861, at the N-terminus as well as AAA, Pfam:PF00004 and AAA_2, Pfam:PF07724.	Domain
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	PF07724	AAA domain (Cdc48 subfamily) (AAA_2)	AAA domain (Cdc48 subfamily)	This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model.	Domain
H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], M [auth S], N [auth T], O [auth U], P [auth H], Q [auth I], R [auth J], S [auth K], T [auth M], U [auth N]	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	ATP-dependent Clp protease ATP-binding subunit ClpX	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding unfolded protein binding protein binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity cation binding transition metal ion binding zinc ion binding metal ion binding protein dimerization activity ATP-dependent protein folding chaperone protein folding chaperone	cellular process cell division catabolic process proteolysis involved in protein catabolic process proteolysis metabolic process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process	protein-containing complex intracellular anatomical structure catalytic complex peptidase complex cytosolic proteasome complex HslUV protease complex cellular anatomical structure proteasome complex endopeptidase complex cytoplasm cytosol intracellular protein-containing complex
G	Unidentified protein substrate	-	-	-
H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], M [auth S], N [auth T], O [auth U], P [auth H], Q [auth I], R [auth J], S [auth K], T [auth M], U [auth N]	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process proteolysis metabolic process cellular process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins	cellular anatomical structure intracellular anatomical structure cytoplasm endopeptidase Clp complex protein-containing complex catalytic complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	IPR050052	ATP-dependent Clp protease ATP-binding subunit ClpX	Family
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	IPR046425	Clp protease, ATP-binding subunit ClpX, bacteria	Family
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	IPR004487	Clp protease, ATP-binding subunit ClpX	Family
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	IPR010603	Zinc finger, ClpX C4-type	Domain
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	IPR003593	AAA+ ATPase domain	Domain
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	IPR003959	ATPase, AAA-type, core	Domain
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	IPR019489	Clp ATPase, C-terminal	Domain
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], A [auth E], B [auth A], C [auth F], D [auth C], E [auth B], F [auth D]	IPR038366	Zinc finger, ClpX C4-type superfamily	Homologous Superfamily
H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], M [auth S], N [auth T], O [auth U], P [auth H], Q [auth I], R [auth J], S [auth K], T [auth M], U [auth N]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], M [auth S], N [auth T], O [auth U], P [auth H], Q [auth I], R [auth J], S [auth K], T [auth M], U [auth N]	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], M [auth S], N [auth T], O [auth U], P [auth H], Q [auth I], R [auth J], S [auth K], T [auth M], U [auth N]	IPR018215	ClpP, Ser active site	Active Site
H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], M [auth S], N [auth T], O [auth U], P [auth H], Q [auth I], R [auth J], S [auth K], T [auth M], U [auth N]	IPR033135	ClpP, histidine active site	Active Site
H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], H [auth L], I [auth O], J [auth P], K [auth Q], L [auth R], M [auth S], N [auth T], O [auth U], P [auth H], Q [auth I], R [auth J], S [auth K], T [auth M], U [auth N]	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family