6YLF

Rix1-Rea1 pre-60S particle - Rea1, body 3 (rigid body refinement, composite structure of Rea1 ring and tail)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth xP1]	PF08154	e6ylfxP11	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF08154	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AP1]	PF07728	AAA domain (dynein-related subfamily) (AAA_5)	AAA domain (dynein-related subfamily)	This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model.	Domain
A [auth AP1]	PF21108	Midasin AAA+ ATPase lid domain (MDN1_4th)	Midasin AAA+ ATPase lid domain	Mdn1 is an essential AAA (ATPase associated with various activities) protein that removes assembly factors from distinct precursors of the ribosomal 60S subunit [2]. This entry represents the AAA domain lid domain.	Domain
A [auth AP1]	PF17867	Midasin AAA lid domain (AAA_lid_7)	Midasin AAA lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. This lid domain is found in midasin proteins.	Domain
B [auth xP1]	PF08154	NLE (NUC135) domain (NLE)	NLE (NUC135) domain	This domain is located N terminal to WD40 repeats. It is found in the microtubule-associated protein Swiss:Q12024 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AP1]	Midasin	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	establishment of organelle localization regulation of localization cellular localization ribonucleoprotein complex biogenesis regulation of cellular process nucleocytoplasmic transport transport nuclear transport cellular component biogenesis localization ribosome biogenesis organelle localization establishment of localization in cell cellular component organization or biogenesis establishment of organelle localization regulation of localization cellular localization ribonucleoprotein complex biogenesis regulation of cellular process nucleocytoplasmic transport transport nuclear transport cellular component biogenesis localization ribosome biogenesis organelle localization establishment of localization in cell cellular component organization or biogenesis nuclear export ribosome localization ribonucleoprotein complex localization regulation of intracellular transport regulation of ribonucleoprotein complex localization regulation of biological process regulation of transport ribosomal subunit export from nucleus biological regulation regulation of ribosomal subunit export from nucleus intracellular transport regulation of nucleocytoplasmic transport establishment of localization protein-containing complex localization regulation of cellular localization cellular process cellular biosynthetic process RNA metabolic process rRNA processing nucleobase-containing compound metabolic process organic substance metabolic process organic substance biosynthetic process RNA processing rRNA metabolic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process nucleic acid catabolic process metabolic process macromolecule metabolic process cellular component organization protein-RNA complex organization protein-containing complex organization protein-containing complex remodeling protein-RNA complex remodeling ribosomal large subunit export from nucleus organelle assembly non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly organelle organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly ribosome assembly	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle nucleus membrane-enclosed lumen nucleolus intracellular organelle lumen organelle lumen intracellular non-membrane-bounded organelle membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle nucleus membrane-enclosed lumen nucleolus intracellular organelle lumen organelle lumen intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle preribosome protein-containing complex ribonucleoprotein complex preribosome, large subunit precursor nucleoplasm
B [auth xP1]	Ribosome assembly protein 4	-	cellular component organization protein-RNA complex organization protein-containing complex organization protein-containing complex remodeling protein-RNA complex remodeling cellular process cellular component organization or biogenesis ribonucleoprotein complex biogenesis organelle assembly non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis ribosome biogenesis cellular component organization protein-RNA complex organization protein-containing complex organization protein-containing complex remodeling protein-RNA complex remodeling cellular process cellular component organization or biogenesis ribonucleoprotein complex biogenesis organelle assembly non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis ribosome biogenesis organelle organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly ribosome assembly	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AP1]	IPR048617	Midasin, lid domain 4	Domain
A [auth AP1]	IPR011704	ATPase, dynein-related, AAA domain	Domain
A [auth AP1]	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
A [auth AP1]	IPR025662	Sigma-54 interaction domain, ATP-binding site 1	Binding Site
A [auth AP1]	IPR040848	Midasin, AAA lid domain 7	Domain
A [auth AP1]	IPR012099	Midasin	Family
A [auth AP1]	IPR003593	AAA+ ATPase domain	Domain
A [auth AP1]	IPR041190	Midasin AAA lid domain 5	Domain
A [auth AP1]	IPR002035	von Willebrand factor, type A	Domain
A [auth AP1]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B [auth xP1]	IPR001680	WD40 repeat	Repeat
B [auth xP1]	IPR019775	WD40 repeat, conserved site	Conserved Site
B [auth xP1]	IPR012972	NLE	Domain
B [auth xP1]	IPR020472	G-protein beta WD-40 repeat	Repeat
B [auth xP1]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
B [auth xP1]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.