6YLY

pre-60S State NE2 (TAP-Flag-Nop53)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth F]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)
J [auth F]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
K [auth f]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
L [auth G]SCOP2B SuperfamilyL30e-like8063962 3001739 SCOP2B (2022-06-29)
M [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
Q [auth i]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
R [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins8080044 3001320 SCOP2B (2022-06-29)
S [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like8053562 3002206 SCOP2B (2022-06-29)
T [auth L]SCOP2B SuperfamilyRibosomal protein L13e-like8053159 3002162 SCOP2B (2022-06-29)
U [auth l]SCOP2B SuperfamilyRibosomal protein L39e8078549 3001756 SCOP2B (2022-06-29)
W [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins8103126 3001320 SCOP2B (2022-06-29)
X [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
Z [auth O]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
AA [auth P]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
BA [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
CA [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyTranslational proteins8078363 3000811 SCOP2B (2022-06-29)
GA [auth U]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
HA [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
JA [auth X]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
KA [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
LA [auth y]SCOP2B SuperfamilyPentein8036230 3000640 SCOP2B (2022-06-29)
MA [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
SA [auth o]SCOP2B SuperfamilyRNA-binding domain RBD8061969 3000110 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyRibosomal protein L48052816 3001146 SCOP2B (2022-06-29)
E [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052815 3002143 SCOP2B (2022-06-29)
F [auth c]SCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARibosomal_L2_1e6ylyA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
ARibosomal_L2_C_2e6ylyA1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
J [auth F]Ribosomal_L30_1e6ylyF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
K [auth f]Ribosomal_L35Aee6ylyf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
L [auth G]Ribosomal_L7Ae_1e6ylyG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
M [auth g]Ribosomal_L34ee6ylyg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
N [auth I]zf-C2H2_jaze6ylyI1 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: zf-C2H2_jazECOD (1.6)
O [auth H]Ribosomal_L6_2e6ylyH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
O [auth H]Ribosomal_L6e6ylyH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
P [auth h]Ribosomal_L29_2e6ylyh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
Q [auth i]Ribosomal_L36ee6ylyi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
R [auth j]Ribosomal_L37ee6ylyj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
S [auth k]Ribosomal_L38ee6ylyk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
B [auth a]Ribosomal_L18e6ylya1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
T [auth L]Ribosomal_L13ee6ylyL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
U [auth l]Ribosomal_L39e6ylyl1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
V [auth M]Ribosomal_L14ee6ylyM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
W [auth p]Ribosomal_L37aee6ylyp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
X [auth N]Ribosomal_L15ee6ylyN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
Z [auth O]Ribosomal_L13e6ylyO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
AA [auth P]Ribosomal_L22e6ylyP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
BA [auth Q]Ribosomal_L18e6ylyQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
CA [auth R]Ribosomal_L19e_Ne6ylyR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
CA [auth R]Ribosomal_L19e_Ce6ylyR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
C [auth B]Ribosomal_L3e6ylyB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
EA [auth S]Ribosomal_L18Ae6ylyS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
GA [auth U]Ribosomal_L22ee6ylyU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
HA [auth V]Ribosomal_L14e6ylyV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
IA [auth W]Ribosomal_L10e6ylyW1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
IA [auth W]Ribosomal_P0_L10ee6ylyW2 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: Ribosomal_P0_L10eECOD (1.6)
JA [auth X]Ribosomal_L23_3e6ylyX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
KA [auth Y]Ribosomal_L26e6ylyY1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
LA [auth y]eIF-6e6ylyy1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: eIF-6ECOD (1.6)
MA [auth Z]Ribosomal_L27ee6ylyZ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
QA [auth K]Ribosomal_L1_2nde6ylyK1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2ndECOD (1.6)
QA [auth K]Ribosomal_L1_1st_1e6ylyK2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1st_1ECOD (1.6)
UA [auth t]Ribosomal_L30_1e6ylyt1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
E [auth C]Ribosomal_L4e6ylyC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
E [auth C]Ribos_L4_asso_Ce6ylyC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
F [auth c]Ribosomal_L7Aee6ylyc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
G [auth d]Ribosomal_L31ee6ylyd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
H [auth E]Ribosomal_L6ee6ylyE1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
I [auth e]Ribosomal_L32ee6ylye1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
J [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
J [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
K [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
L [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
M [auth g]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
N [auth I]PF12171Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz)Zinc-finger double-stranded RNA-binding- Family
O [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
P [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
Q [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
R [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
S [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
B [auth a]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
T [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
U [auth l]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
V [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
V [auth M]PF00467KOW motif (KOW)KOW motif- Family
W [auth p]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
X [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
Y [auth u]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
Z [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
AA [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
BA [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
CA [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
C [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
DA [auth r]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
EA [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
FA [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
GA [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
HA [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
IA [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
IA [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
JA [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
JA [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
KA [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
KA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
LA [auth y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
MA [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
D [auth b]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
D [auth b]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
D [auth b]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
NA [auth z]PF10338Protein of unknown function (DUF2423) (DUF2423)Protein of unknown function (DUF2423)- Family
QA [auth K]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
RA [auth n]PF16589BRCT domain, a BRCA1 C-terminus domain (BRCT_2)BRCT domain, a BRCA1 C-terminus domain- Family
SA [auth o]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
TA [auth q]PF07767Nop53 (60S ribosomal biogenesis) (Nop53)Nop53 (60S ribosomal biogenesis)- Family
UA [auth t]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
WA [auth s]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
E [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
E [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
F [auth c]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
G [auth d]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
H [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
I [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
60S ribosomal protein L2-A
J [auth F]60S ribosomal protein L7-A
K [auth f]60S ribosomal protein L33-A
L [auth G]60S ribosomal protein L8-A
M [auth g]60S ribosomal protein L34-A
N [auth I]Bud site selection protein 20
O [auth H]60S ribosomal protein L9-A
P [auth h]60S ribosomal protein L35-A
Q [auth i]60S ribosomal protein L36-A
R [auth j]60S ribosomal protein L37-A
S [auth k]60S ribosomal protein L38
B [auth a]60S ribosomal protein L28
T [auth L]60S ribosomal protein L13-A
U [auth l]60S ribosomal protein L39
V [auth M]60S ribosomal protein L14-A
W [auth p]60S ribosomal protein L43-A
X [auth N]60S ribosomal protein L15-A
Y [auth u]Ribosome biogenesis protein RLP24
Z [auth O]60S ribosomal protein L16-A
AA [auth P]60S ribosomal protein L17-A
BA [auth Q]60S ribosomal protein L18-A
CA [auth R]60S ribosomal protein L19-A
C [auth B]60S ribosomal protein L3
DA [auth r]Ribosome biogenesis protein NSA2-
EA [auth S]60S ribosomal protein L20-A
FA [auth T]60S ribosomal protein L21-A
GA [auth U]60S ribosomal protein L22-A
HA [auth V]60S ribosomal protein L23-A
IA [auth W]Ribosome assembly factor MRT4
JA [auth X]60S ribosomal protein L25
KA [auth Y]60S ribosomal protein L26-A
LA [auth y]Eukaryotic translation initiation factor 6
MA [auth Z]60S ribosomal protein L27-A
D [auth b]Nucleolar GTP-binding protein 1
NA [auth z]UPF0642 protein YBL028C- -
OA [auth 1]25S rRNA---
PA [auth 3]5.8S rRNA---
QA [auth K]Proteasome-interacting protein CIC1
RA [auth n]Pescadillo homolog
SA [auth o]Ribosome biogenesis protein 15
TA [auth q]Ribosome biogenesis protein NOP53
UA [auth t]Ribosome biogenesis protein RLP7
VA [auth 6]ITS2---
WA [auth s]Nuclear GTP-binding protein NUG1
E [auth C]60S ribosomal protein L4-A
F [auth c]60S ribosomal protein L30
G [auth d]60S ribosomal protein L31-A
H [auth E]60S ribosomal protein L6-A
I [auth e]60S ribosomal protein L32

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
J [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
J [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
J [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
J [auth F]IPR039699Large ribosomal subunit protein uL30Family
J [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
J [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
J [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
K [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
K [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
K [auth f]IPR001780Large ribosomal subunit protein eL33Family
K [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
L [auth G]IPR001921Large ribosomal subunit protein eL8Family
L [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
L [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
L [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
L [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
M [auth g]IPR008195Large ribosomal subunit protein eL34Family
M [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
N [auth I]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
N [auth I]IPR013087Zinc finger C2H2-typeDomain
N [auth I]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
N [auth I]IPR022755Zinc finger, double-stranded RNA bindingDomain
O [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
O [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
O [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
O [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
P [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
P [auth h]IPR001854Large ribosomal subunit protein uL29Family
P [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
P [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
Q [auth i]IPR000509Large ribosomal subunit protein eL36Family
Q [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
R [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
R [auth j]IPR001569Large ribosomal subunit protein eL37Family
R [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
R [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
S [auth k]IPR002675Large ribosomal subunit protein eL38Family
S [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
B [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
B [auth a]IPR030878Large ribosomal subunit protein uL15Family
B [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
B [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
T [auth L]IPR001380Large ribosomal subunit protein eL13Family
T [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
U [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
U [auth l]IPR000077Large ribosomal subunit protein eL39Family
U [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
V [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
V [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
V [auth M]IPR039660Large ribosomal subunit protein eL14Family
V [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
V [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
V [auth M]IPR005824KOWDomain
W [auth p]IPR002674Large ribosomal subunit protein eL43Family
W [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
W [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
X [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
X [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
X [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
X [auth N]IPR000439Large ribosomal subunit protein eL15Family
Y [auth u]IPR011017TRASH domainDomain
Y [auth u]IPR000988Large ribosomal subunit protein eL24-relatedFamily
Y [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
Z [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
Z [auth O]IPR005822Large ribosomal subunit protein uL13Family
Z [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
Z [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
AA [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
AA [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
AA [auth P]IPR001063Large ribosomal subunit protein uL22Family
AA [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
BA [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
BA [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
BA [auth Q]IPR000039Large ribosomal subunit protein eL18Family
BA [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
CA [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
CA [auth R]IPR039547Large ribosomal subunit protein eL19Family
CA [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
CA [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
CA [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
CA [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
C [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
C [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
C [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
C [auth B]IPR000597Large ribosomal subunit protein uL3Family
C [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DA [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
DA [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
EA [auth S]IPR028877Large ribosomal subunit protein eL20Family
EA [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
EA [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
FA [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
FA [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
FA [auth T]IPR001147Large ribosomal subunit protein eL21Family
FA [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth U]IPR002671Large ribosomal subunit protein eL22Family
GA [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
HA [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
HA [auth V]IPR000218Large ribosomal subunit protein uL14Family
HA [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IA [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
IA [auth W]IPR001790Large ribosomal subunit protein uL10Family
IA [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
IA [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
IA [auth W]IPR033867Ribosome assembly factor Mrt4Family
JA [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
JA [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
JA [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
JA [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
JA [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
KA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
KA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
KA [auth Y]IPR005824KOWDomain
KA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
KA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
KA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
LA [auth y]IPR002769Translation initiation factor IF6Family
MA [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
MA [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
MA [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth Z]IPR001141Large ribosomal subunit protein eL27Family
MA [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
D [auth b]IPR024926Nucleolar GTP-binding protein 1Family
D [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
D [auth b]IPR012973NOG, C-terminalDomain
D [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
D [auth b]IPR041623NOG1, N-terminal helical domainDomain
D [auth b]IPR006073GTP binding domainDomain
D [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
NA [auth z]IPR019434Domain of unknown function DUF2423Domain
QA [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
QA [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
RA [auth n]IPR010613PescadilloFamily
RA [auth n]IPR001357BRCT domainDomain
RA [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
SA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
SA [auth o]IPR000504RNA recognition motif domainDomain
SA [auth o]IPR034469Ribosome biogenesis protein 15, RNA recognition motifDomain
SA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
TA [auth q]IPR011687Ribosome biogenesis protein Nop53/GLTSCR2Family
UA [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
UA [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
UA [auth t]IPR039699Large ribosomal subunit protein uL30Family
UA [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
UA [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
WA [auth s]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
WA [auth s]IPR006073GTP binding domainDomain
WA [auth s]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
WA [auth s]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
WA [auth s]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
E [auth C]IPR002136Large ribosomal subunit protein uL4Family
E [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
E [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
E [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
F [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
F [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
F [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
G [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
G [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
G [auth d]IPR000054Large ribosomal subunit protein eL31Family
H [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
H [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
H [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth E]IPR000915Large ribosomal subunit protein eL6Family
I [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
I [auth e]IPR001515Large ribosomal subunit protein eL32Family
I [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site