Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth q]SCOP2B SuperfamilyRibosomal protein S168097484 3000680 SCOP2B (2022-06-29)
L [auth r]SCOP2B SuperfamilyNucleic acid-binding proteins8097504 3000135 SCOP2B (2022-06-29)
O [auth v]SCOP2B SuperfamilyRibosomal protein S218097456 3002159 SCOP2B (2022-06-29)
C [auth c]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8097482 3001397 SCOP2B (2022-06-29)
D [auth e]SCOP2B SuperfamilyAlpha-L RNA-binding motif8097528 3001473 SCOP2B (2022-06-29)
F [auth g]SCOP2B SuperfamilyRibosomal protein S68097458 3001323 SCOP2B (2022-06-29)
G [auth i]SCOP2B SuperfamilyRibosomal protein S88097514 3000709 SCOP2B (2022-06-29)
H [auth l]SCOP2 FamilyRibosomal protein L18p and S118097525 4000555 SCOP2 (2022-06-29)
H [auth l]SCOP2 SuperfamilyTranslational machinery components8097526 3000571 SCOP2 (2022-06-29)
I [auth m]SCOP2B SuperfamilyNucleic acid-binding proteins8097464 3000135 SCOP2B (2022-06-29)
J [auth p]SCOP2 Family30S Ribosomal protein S15 / 40S Ribosomal protein S138097477 4000767 SCOP2 (2022-06-29)
J [auth p]SCOP2 SuperfamilyS15/NS1 RNA-binding domain8097478 3001284 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
K [auth q]PF00886e6ypuq1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
L [auth r]PF00366e6ypur1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
M [auth s]PF01084e6ypus1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
N [auth u]PF01649e6ypuu1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
O [auth v]PF01165e6ypuv1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
C [auth c]PF00318e6ypuc1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
D [auth e]PF00163,PF01479e6ypue1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
E [auth f]PF03719e6ypuf1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
E [auth f]PF00333e6ypuf2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
F [auth g]PF01250e6ypug1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
G [auth i]PF00410e6ypui2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
G [auth i]PF00410e6ypui1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
H [auth l]PF00411e6ypul1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
I [auth m]PF00164e6ypum1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
J [auth p]PF00312e6ypup1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth q]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
L [auth r]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
M [auth s]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
N [auth u]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
O [auth v]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
C [auth c]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
D [auth e]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
D [auth e]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth f]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
E [auth f]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
F [auth g]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
G [auth i]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
H [auth l]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
I [auth m]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
J [auth p]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2],
B [auth 4]
16S ribosomal RNA---
K [auth q]30S ribosomal protein S16
L [auth r]30S ribosomal protein S17
M [auth s]30S ribosomal protein S18
N [auth u]30S ribosomal protein S20
O [auth v]30S ribosomal protein S21
C [auth c]30S ribosomal protein S2
D [auth e]30S ribosomal protein S4
E [auth f]30S ribosomal protein S5
F [auth g]30S ribosomal protein S6
G [auth i]30S ribosomal protein S8
H [auth l]30S ribosomal protein S11
I [auth m]30S ribosomal protein S12
J [auth p]30S ribosomal protein S15

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
K [auth q]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
K [auth q]IPR000307Small ribosomal subunit protein bS16Family
K [auth q]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
L [auth r]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
L [auth r]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
L [auth r]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth r]IPR000266Small ribosomal subunit protein uS17Family
M [auth s]IPR001648Small ribosomal subunit protein bS18Family
M [auth s]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
M [auth s]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
N [auth u]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
N [auth u]IPR002583Small ribosomal subunit protein bS20Family
O [auth v]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
O [auth v]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
O [auth v]IPR001911Small ribosomal subunit protein bS21Family
C [auth c]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
C [auth c]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth c]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth c]IPR001865Small ribosomal subunit protein uS2Family
D [auth e]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth e]IPR002942RNA-binding S4 domainDomain
D [auth e]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth e]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth e]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
D [auth e]IPR022801Small ribosomal subunit protein uS4Family
E [auth f]IPR000851Small ribosomal subunit protein uS5Family
E [auth f]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth f]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth f]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth f]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth f]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
E [auth f]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth g]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth g]IPR000529Small ribosomal subunit protein bS6Family
F [auth g]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth g]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth g]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth i]IPR000630Small ribosomal subunit protein uS8Family
G [auth i]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
G [auth i]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
H [auth l]IPR001971Small ribosomal subunit protein uS11Family
H [auth l]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
H [auth l]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
H [auth l]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
I [auth m]IPR006032Small ribosomal subunit protein uS12Family
I [auth m]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth m]IPR005679Ribosomal protein uS12, bacterial-typeFamily
J [auth p]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
J [auth p]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
J [auth p]IPR000589Small ribosomal subunit protein uS15Family