Annotations: 6LK8

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Nucleoporin NUP85	8105018	4006614	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Coat and nuclear envelope proteins	8105019	3002276	SCOP2 (2022-06-29)
X [auth b]	SCOP2B Superfamily	Coat and nuclear envelope proteins	8105019	3002276	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF07575	e6lk8B1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
X [auth b]	PF07575	e6lk8b1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
C	PF00400	e6lk8C1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PF00400	ECOD (1.6)
Y [auth c]	PF00400	e6lk8c1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PF00400	ECOD (1.6)
DA [auth h]	PF00400	e6lk8h1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
H	PF00400	e6lk8H1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
FA [auth j]	PF08801	e6lk8j2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
FA [auth j]	PF03177	e6lk8j1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
J	PF08801	e6lk8J2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
J	PF03177	e6lk8J1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
K [auth S]	PF07719	e6lk8S1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF07719	ECOD (1.6)
L [auth T]	PF07719	e6lk8T1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF07719	ECOD (1.6)
M [auth U]	PF07719	e6lk8U1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF07719	ECOD (1.6)
N [auth V]	PF07719	e6lk8V1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF07719	ECOD (1.6)
D	PF00400	e6lk8D1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
Z [auth d]	PF00400	e6lk8d1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
AA [auth e]	PF11715	e6lk8e1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
AA [auth e]	F_UNCLASSIFIED	e6lk8e2	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: F_UNCLASSIFIED	ECOD (1.6)
AA [auth e]	F_UNCLASSIFIED	e6lk8e3	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
E	PF11715	e6lk8E2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
E	F_UNCLASSIFIED	e6lk8E3	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: F_UNCLASSIFIED	ECOD (1.6)
E	F_UNCLASSIFIED	e6lk8E1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
BA [auth f]	PF00400	e6lk8f1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
F	PF00400	e6lk8F1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, X [auth b]	PF07575	Nup85 Nucleoporin (Nucleopor_Nup85)	Nup85 Nucleoporin	-	Family
C, Y [auth c]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
DA [auth h], H	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
A, W [auth a]	PF11894	Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192)	Nuclear pore complex scaffold, nucleoporins 186/192/205	-	Repeat
FA [auth j], J	PF03177	Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C)	Non-repetitive/WGA-negative nucleoporin C-terminal	-	Family
FA [auth j], J	PF08801	Nup133 N terminal like (Nucleoporin_N)	Nup133 N terminal like	-	Repeat
D, Z [auth d]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
BA [auth f], F	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
EA [auth i], I	PF04121	Nuclear pore protein 84 / 107 (Nup84_Nup100)	Nuclear pore protein 84 / 107	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, X [auth b]	Nuclear pore complex protein Nup85	-	developmental process multicellular organism development multicellular organismal process anatomical structure development animal organ development nephron development kidney development renal system development system development RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport developmental process multicellular organism development multicellular organismal process anatomical structure development animal organ development nephron development kidney development renal system development system development RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization cellular localization protein transport cellular macromolecule localization cellular process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore nuclear membrane membrane organelle membrane
C, Y [auth c]	MGC154553 protein	-	-	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
DA [auth h], H	GATOR complex protein SEC13	structural molecule activity	RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization cellular localization protein transport cellular macromolecule localization cellular process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol vacuolar membrane membrane-bounded organelle membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle intracellular anatomical structure cytoplasm cellular anatomical entity cytosol vacuolar membrane membrane-bounded organelle membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle lysosomal membrane organelle membrane lysosome protein-containing complex nucleus nuclear protein-containing complex endomembrane system organelle envelope nuclear envelope nuclear pore
O [auth K]	Nup214 complex Coiled-coil region 1, helix 1	-	-	-
S [auth O]	Nup214 complex Coiled coil region 2, helix 2	-	-	-
T [auth P]	Nup214 complex Coiled coil region 2, helix 3	-	-	-
U [auth Q], V [auth R]	bridge domain	-	-	-
A, W [auth a]	MGC83295 protein	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore
FA [auth j], J	outer Nup133	structural molecule activity structural constituent of nuclear pore	-	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore
K [auth S], L [auth T], M [auth U], N [auth V]	Nup358 complex, clamps	cation binding ion binding binding metal ion binding small molecule binding	localization cellular localization transport establishment of localization in cell intracellular transport cellular process establishment of localization	-
P [auth L]	Nup214 complex coiled coil region 1, helix 2	-	-	-
Q [auth M]	Nup214 complex coiled coil region 1, helix 3	-	-	-
R [auth N]	Nup214 complex Coiled coil region 2, helix 1	-	-	-
D, Z [auth d]	Nucleoporin SEH1-A	structural molecule activity	cellular component organization nucleus organization organelle organization nuclear pore organization protein-containing complex organization cellular process cellular component organization or biogenesis cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process cellular component organization nucleus organization organelle organization nuclear pore organization protein-containing complex organization cellular process cellular component organization or biogenesis cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction positive regulation of TORC1 signaling intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction positive regulation of TOR signaling signal transduction regulation of TORC1 signaling positive regulation of cellular process TOR signaling regulation of biological process regulation of signaling regulation of TOR signaling biological regulation positive regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication TORC1 signaling positive regulation of signaling RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport establishment of organelle localization cellular localization mitotic metaphase chromosome alignment mitotic cell cycle metaphase chromosome alignment chromosome localization organelle localization establishment of localization in cell mitotic sister chromatid segregation cell cycle chromosome segregation cell cycle process mitotic nuclear division attachment of spindle microtubules to kinetochore organelle fission attachment of mitotic spindle microtubules to kinetochore chromosome organization sister chromatid segregation nuclear division mitotic cell cycle process nuclear chromosome segregation establishment of chromosome localization cell division cellular response to nutrient levels response to nutrient levels protein localization establishment of protein localization protein transport cellular macromolecule localization	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle cellular anatomical entity endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle cellular anatomical entity endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore vacuolar membrane membrane lytic vacuole vacuole lytic vacuole membrane bounding membrane of organelle lysosomal membrane cytoplasm organelle membrane lysosome chromosome chromosomal region kinetochore intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle cytosol GATOR2 complex Seh1-associated complex
AA [auth e], E	outer Nup160	-	-	-
BA [auth f], F	MGC83926 protein	-	-	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore
CA [auth g], G	Nuclear pore complex protein Nup96	-	-	-
EA [auth i], I	Nuclear pore complex protein	structural molecule activity structural constituent of nuclear pore	RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization cellular localization protein transport cellular macromolecule localization cellular process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore nuclear membrane membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, X [auth b]	IPR011502	Nucleoporin Nup85-like	Family
C, Y [auth c]	IPR001680	WD40 repeat	Repeat
C, Y [auth c]	IPR019775	WD40 repeat, conserved site	Conserved Site
C, Y [auth c]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
C, Y [auth c]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
DA [auth h], H	IPR001680	WD40 repeat	Repeat
DA [auth h], H	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
DA [auth h], H	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
DA [auth h], H	IPR037363	Sec13/Seh1 family	Family
A, W [auth a]	IPR021827	Nucleoporin Nup186/Nup192/Nup205	Family
FA [auth j], J	IPR014908	Nucleoporin, Nup133/Nup155-like, N-terminal	Domain
FA [auth j], J	IPR037624	Nuclear pore complex protein Nup133-like	Family
FA [auth j], J	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
FA [auth j], J	IPR007187	Nucleoporin, Nup133/Nup155-like, C-terminal	Domain
K [auth S], L [auth T], M [auth U], N [auth V]	IPR036443	Zinc finger, RanBP2-type superfamily	Homologous Superfamily
K [auth S], L [auth T], M [auth U], N [auth V]	IPR022011	Nup358/RanBP2 E3 ligase domain	Domain
K [auth S], L [auth T], M [auth U], N [auth V]	IPR011993	PH-like domain superfamily	Homologous Superfamily
K [auth S], L [auth T], M [auth U], N [auth V]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
K [auth S], L [auth T], M [auth U], N [auth V]	IPR000156	Ran binding domain	Domain
K [auth S], L [auth T], M [auth U], N [auth V]	IPR019734	Tetratricopeptide repeat	Repeat
K [auth S], L [auth T], M [auth U], N [auth V]	IPR001876	Zinc finger, RanBP2-type	Domain
K [auth S], L [auth T], M [auth U], N [auth V]	IPR045255	Ran binding protein RanBP1-like	Family
D, Z [auth d]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
D, Z [auth d]	IPR037363	Sec13/Seh1 family	Family
D, Z [auth d]	IPR001680	WD40 repeat	Repeat
D, Z [auth d]	IPR020472	G-protein beta WD-40 repeat	Repeat
D, Z [auth d]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
BA [auth f], F	IPR037626	Nucleoporin Nup37	Family
BA [auth f], F	IPR001680	WD40 repeat	Repeat
BA [auth f], F	IPR019775	WD40 repeat, conserved site	Conserved Site
BA [auth f], F	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
BA [auth f], F	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
EA [auth i], I	IPR007252	Nuclear pore protein 84/107	Family