7DIB | pdb_00007dib

Crystal structure of D-threonine aldolase from Filomicrobium marinum

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BD-ser_dehydrate7dibB2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: D-ser_dehydratECOD (1.6)
BAla_racemase_Ne7dibB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Ala_racemase_NECOD (1.6)
AD-ser_dehydrate7dibA2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: D-ser_dehydratECOD (1.6)
AAla_racemase_Ne7dibA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Ala_racemase_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF14031Putative serine dehydratase domain (D-ser_dehydrat)Putative serine dehydratase domainThis domain is found at the C-terminus of yeast D-serine dehydratase [1]. Structures have been solved for two bacterial members of this family. The yeast protein has been shown to be a zinc dependent enzyme. Domain
A, B
PF01168Alanine racemase, N-terminal domain (Ala_racemase_N)Alanine racemase, N-terminal domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
D-threonine aldolase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR029066PLP-binding barrelHomologous Superfamily
A, B
IPR042208D-serine dehydratase-like domain superfamilyHomologous Superfamily
A, B
IPR026956D-serine dehydratase-like domainDomain
A, B
IPR051466D-amino acid metabolism enzymeFamily
A, B
IPR001608Alanine racemase, N-terminalDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B
LLP Parent Component: LYS

RESID:  AA0119

PSI-MOD :  N6-pyridoxal phosphate-L-lysine MOD:00128