80S ribosome from mouse bound to eEF2 (Class I)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth D1] | SCOP2 Family | Ribosomal protein L10e | 8105827 | 4001135 | SCOP2 (2022-06-29) |
D [auth D1] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8105828 | 3000884 | SCOP2 (2022-06-29) |
F [auth F1] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8098708 | 3002162 | SCOP2B (2022-06-29) |
H [auth H1] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8100472 | 3000210 | SCOP2B (2022-06-29) |
T [auth L2] | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8098958 | 3000890 | SCOP2B (2022-06-29) |
X [auth P2] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8098862 | 3000433 | SCOP2B (2022-06-29) |
CA [auth U2] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8098508 | 3001045 | SCOP2B (2022-06-29) |
DA [auth V2] | SCOP2B Superfamily | Ribosomal protein L29e | 8098704 | 3002157 | SCOP2B (2022-06-29) |
EA [auth W2] | SCOP2B Superfamily | L30e-like | 8098866 | 3001739 | SCOP2B (2022-06-29) |
GA [auth Y2] | SCOP2B Superfamily | Ribosomal protein L32e | 8102144 | 3000982 | SCOP2B (2022-06-29) |
MA [auth e2] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8100550 | 3002206 | SCOP2B (2022-06-29) |
VA [auth p2] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8103963 | 3002166 | SCOP2B (2022-06-29) |
BB [auth s2] | SCOP2 Family | Ribosomal protein S7 | 8105829 | 4001112 | SCOP2 (2022-06-29) |
BB [auth s2] | SCOP2 Superfamily | Ribosomal protein S7 | 8105830 | 3000799 | SCOP2 (2022-06-29) |
EB [auth y2] | SCOP2 Family | Translational machinery components | 8105785 | 4000951 | SCOP2 (2022-06-29) |
EB [auth y2] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8105786 | 3000100 | SCOP2 (2022-06-29) |
FB [auth A3] | SCOP2 Family | Ribosomal protein S13 | 8105807 | 4000260 | SCOP2 (2022-06-29) |
FB [auth A3] | SCOP2 Superfamily | S13-like H2TH domain | 8105808 | 3000053 | SCOP2 (2022-06-29) |
GB [auth B3] | SCOP2 Family | Rps19E-like | 8105941 | 4000222 | SCOP2 (2022-06-29) |
GB [auth B3] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8105942 | 3000034 | SCOP2 (2022-06-29) |
HB [auth C3] | SCOP2 Family | Ribosomal protein S10 | 8105797 | 4001240 | SCOP2 (2022-06-29) |
HB [auth C3] | SCOP2 Superfamily | Ribosomal protein S10 | 8105798 | 3001336 | SCOP2 (2022-06-29) |
KB [auth F3] | SCOP2 Family | Ribosomal protein S26e | 8105813 | 4006236 | SCOP2 (2022-06-29) |
KB [auth F3] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8105814 | 3000068 | SCOP2 (2022-06-29) |
LB [auth G3] | SCOP2 Family | Cold shock DNA-binding domain-like | 8105815 | 4001909 | SCOP2 (2022-06-29) |
LB [auth G3] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8105816 | 3000135 | SCOP2 (2022-06-29) |
MB [auth H3] | SCOP2 Family | Ribosomal protein S14p/S29e | 8105809 | 4003647 | SCOP2 (2022-06-29) |
MB [auth H3] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8105810 | 3000068 | SCOP2 (2022-06-29) |
NB [auth I3] | SCOP2 Family | WD40-repeat | 8105825 | 4002744 | SCOP2 (2022-06-29) |
NB [auth I3] | SCOP2 Superfamily | WD40 repeat-like | 8105826 | 3001694 | SCOP2 (2022-06-29) |
RB [auth M3] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8105821 | 4001513 | SCOP2 (2022-06-29) |
RB [auth M3] | SCOP2 Superfamily | L30e-like | 8105822 | 3001739 | SCOP2 (2022-06-29) |
TB [auth O3] | SCOP2 Family | Ribosomal protein L18p and S11 | 8105805 | 4000555 | SCOP2 (2022-06-29) |
TB [auth O3] | SCOP2 Superfamily | Translational machinery components | 8105806 | 3000571 | SCOP2 (2022-06-29) |
UB [auth P3] | SCOP2 Family | Ribosomal protein S8 | 8105803 | 4002027 | SCOP2 (2022-06-29) |
UB [auth P3] | SCOP2 Superfamily | Ribosomal protein S8 | 8105804 | 3000709 | SCOP2 (2022-06-29) |
WB [auth R3] | SCOP2 Family | Ribosomal protein S25-like | 8105811 | 4007308 | SCOP2 (2022-06-29) |
WB [auth R3] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8105812 | 3000034 | SCOP2 (2022-06-29) |
CC [auth k] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8043570 | 3000950 | SCOP2B (2022-06-29) |
GC [auth L1] | SCOP2 Family | Ribosomal protein L1p/L10e-like | 8105793 | 4002929 | SCOP2 (2022-06-29) |
GC [auth L1] | SCOP2 Superfamily | Ribosomal protein L1p/L10e-like | 8105794 | 3001911 | SCOP2 (2022-06-29) |
M [auth E2] | SCOP2B Superfamily | Translational proteins | 8098608 | 3000811 | SCOP2B (2022-06-29) |
O [auth G2] | SCOP2B Superfamily | Translational machinery components | 8098706 | 3000571 | SCOP2B (2022-06-29) |
R [auth J2] | SCOP2B Superfamily | Ribosomal protein L22 | 8100468 | 3001078 | SCOP2B (2022-06-29) |
W [auth O2] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8098900 | 3002158 | SCOP2B (2022-06-29) |
AA [auth S2] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8105799 | 4001752 | SCOP2 (2022-06-29) |
AA [auth S2] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8105800 | 3000334 | SCOP2 (2022-06-29) |
HA [auth Z2] | SCOP2B Superfamily | Translational proteins | 8098188 | 3000811 | SCOP2B (2022-06-29) |
IA [auth a2] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8100474 | 3002203 | SCOP2B (2022-06-29) |
NA [auth f2] | SCOP2 Family | ribosomal protein l39e | 8105817 | 4001518 | SCOP2 (2022-06-29) |
NA [auth f2] | SCOP2 Superfamily | Ribosomal protein L39e | 8105818 | 3001756 | SCOP2 (2022-06-29) |
RA [auth j2] | SCOP2 Family | Ribosomal protein L37ae | 8105801 | 4003704 | SCOP2 (2022-06-29) |
RA [auth j2] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8105802 | 3001320 | SCOP2 (2022-06-29) |
E [auth E1] | SCOP2B Superfamily | RL5-like | 8100470 | 3001709 | SCOP2B (2022-06-29) |
AB [auth o2] | SCOP2 Family | Ribosomal protein S2-like | 8105787 | 4003744 | SCOP2 (2022-06-29) |
AB [auth o2] | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8105788 | 3001397 | SCOP2 (2022-06-29) |
CB [auth v2] | SCOP2 Family | eS10-like | 8105823 | 4007434 | SCOP2 (2022-06-29) |
CB [auth v2] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8105824 | 3000034 | SCOP2 (2022-06-29) |
IB [auth D3] | SCOP2 Family | Ribosomal protein S21e | 8105939 | 4006215 | SCOP2 (2022-06-29) |
IB [auth D3] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8105940 | 3000068 | SCOP2 (2022-06-29) |
YB [auth T3] | SCOP2 Family | Ribosomal protein S30e-like | 8105859 | 4005067 | SCOP2 (2022-06-29) |
YB [auth T3] | SCOP2 Superfamily | Ribosomal protein S30e-like | 8105860 | 3002190 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth D1] | Ribosomal_L16 | e7ls2D11 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
F [auth F1] | Ribosomal_L13e | e7ls2F11 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: Ribosomal_L13e | ECOD (1.6) |
G [auth G1] | Ribosomal_L14e | e7ls2G11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L14e | ECOD (1.6) |
H [auth H1] | Ribosomal_L15e | e7ls2H11 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L15e | ECOD (1.6) |
L [auth D2] | Ribosomal_L2_1 | e7ls2D22 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
L [auth D2] | Ribosomal_L2_C_2 | e7ls2D21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
N [auth F2] | Ribosomal_L4 | e7ls2F21 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
N [auth F2] | Ribos_L4_asso_C | e7ls2F22 | A: extended segments | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: Ribos_L4_asso_C | ECOD (1.6) |
P [auth H2] | Ribosomal_L6e | e7ls2H21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L6e | ECOD (1.6) |
Q [auth I2] | Ribosomal_L13 | e7ls2I21 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
T [auth L2] | Ribosomal_L19e_N | e7ls2L22 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: Ribosomal_L19e_N | ECOD (1.6) |
T [auth L2] | Ribosomal_L19e_C | e7ls2L21 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: Ribosomal_L19e_C | ECOD (1.6) |
V [auth N2] | Ribosomal_L21e | e7ls2N21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L21e | ECOD (1.6) |
X [auth P2] | Ribosomal_L14 | e7ls2P21 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
Y [auth Q2] | Ribosomal_L24e | e7ls2Q21 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_L24e | ECOD (1.6) |
Z [auth R2] | Ribosomal_L23_3 | e7ls2R21 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_3 | ECOD (1.6) |
BA [auth T2] | Ribosomal_L27e | e7ls2T21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L27e | ECOD (1.6) |
CA [auth U2] | Ribosomal_L18 | e7ls2U21 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
DA [auth V2] | Ribosomal_L29e | e7ls2V21 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: Ribosomal_L29e | ECOD (1.6) |
EA [auth W2] | Ribosomal_L7Ae | e7ls2W21 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
FA [auth X2] | Ribosomal_L31e | e7ls2X21 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: Ribosomal_L31e | ECOD (1.6) |
GA [auth Y2] | Ribosomal_L32e | e7ls2Y21 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: Ribosomal_L32e | ECOD (1.6) |
JA [auth b2] | Ribosomal_L29_2 | e7ls2b21 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29_2 | ECOD (1.6) |
KA [auth c2] | Ribosomal_L36e | e7ls2c21 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: Ribosomal_L36e | ECOD (1.6) |
LA [auth d2] | Ribosomal_L37e | e7ls2d21 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37e | ECOD (1.6) |
MA [auth e2] | Ribosomal_L38e | e7ls2e21 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: Ribosomal_L38e | ECOD (1.6) |
OA [auth g2] | Ribosomal_L40e | e7ls2g21 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L40e | ECOD (1.6) |
QA [auth i2] | Ribosomal_L44 | e7ls2i21 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L44 | ECOD (1.6) |
SA [auth k2] | Ribosomal_L28e | e7ls2k21 | A: a+b two layers | X: RPL28 (From Topology) | H: RPL28 (From Topology) | T: RPL28 | F: Ribosomal_L28e | ECOD (1.6) |
VA [auth p2] | Ribosomal_S3Ae_N | e7ls2p22 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: Ribosomal_S3Ae_N | ECOD (1.6) |
VA [auth p2] | Ribosomal_S3Ae_C | e7ls2p21 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: Ribosomal_S3Ae_C | ECOD (1.6) |
WA [auth q2] | Ribosomal_S3_C | e7ls2q22 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
WA [auth q2] | KH_2_3 | e7ls2q21 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_3 | ECOD (1.6) |
XA [auth r2] | Ribosomal_S4e | e7ls2r22 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S4e | ECOD (1.6) |
XA [auth r2] | 40S_S4_C | e7ls2r23 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: 40S_S4_C | ECOD (1.6) |
XA [auth r2] | RS4NT | e7ls2r21 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: RS4NT | ECOD (1.6) |
BB [auth s2] | Ribosomal_S7_1 | e7ls2s21 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
DB [auth x2] | Ribosomal_S19 | e7ls2x21 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
EB [auth y2] | Ribosomal_S9 | e7ls2y21 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
FB [auth A3] | Ribosomal_S13 | e7ls2A31 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13 | ECOD (1.6) |
GB [auth B3] | Ribosomal_S19e | e7ls2B31 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S19e | ECOD (1.6) |
HB [auth C3] | Ribosomal_S10_1 | e7ls2C31 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_1 | ECOD (1.6) |
KB [auth F3] | Ribosomal_S26e | e7ls2F31 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S26e | ECOD (1.6) |
LB [auth G3] | Ribosomal_S28e | e7ls2G31 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S28e | ECOD (1.6) |
MB [auth H3] | Ribosomal_S14_2 | e7ls2H31 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_2 | ECOD (1.6) |
NB [auth I3] | DUF1899 | e7ls2I31 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: DUF1899 | ECOD (1.6) |
QB [auth L3] | S4 | e7ls2L31 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
RB [auth M3] | Ribosomal_L7Ae | e7ls2M31 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
TB [auth O3] | Ribosomal_S11 | e7ls2O31 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
UB [auth P3] | Ribosomal_S8_N_1 | e7ls2P32 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N_1 | ECOD (1.6) |
UB [auth P3] | Ribosomal_S8_C_1 | e7ls2P31 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C_1 | ECOD (1.6) |
VB [auth Q3] | Ribosomal_S24e | e7ls2Q31 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_S24e | ECOD (1.6) |
WB [auth R3] | Ribosomal_S25 | e7ls2R31 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S25 | ECOD (1.6) |
ZB [auth U3] | Ribosomal_S27 | e7ls2U31 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27 | ECOD (1.6) |
AC [auth m] | GTP_EFTU_D2 | e7ls2m5 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2 | ECOD (1.6) |
AC [auth m] | EFG_IV | e7ls2m2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: EFG_IV | ECOD (1.6) |
AC [auth m] | EFG_C | e7ls2m3 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: EFG_C | ECOD (1.6) |
AC [auth m] | EFG_II | e7ls2m4 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: EFG_II | ECOD (1.6) |
AC [auth m] | MnmE_helical_2nd | e7ls2m1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
CC [auth k] | Ribosomal_L11 | e7ls2k1 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
CC [auth k] | Ribosomal_L11_N | e7ls2k2 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: Ribosomal_L11_N | ECOD (1.6) |
GC [auth L1] | Ribosomal_L1_2nd_1 | e7ls2L11 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: Ribosomal_L1_2nd_1 | ECOD (1.6) |
GC [auth L1] | Ribosomal_L1_1st_1 | e7ls2L12 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: Ribosomal_L1_1st_1 | ECOD (1.6) |
A [auth A1] | Ribosomal_L30_1 | e7ls2A11 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30_1 | ECOD (1.6) |
M [auth E2] | Ribosomal_L3 | e7ls2E21 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
O [auth G2] | Ribosomal_L5e | e7ls2G21 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L5e | ECOD (1.6) |
R [auth J2] | Ribosomal_L22 | e7ls2J21 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
S [auth K2] | Ribosomal_L18 | e7ls2K21 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
B [auth B1] | Ribosomal_L7Ae_1 | e7ls2B11 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
U [auth M2] | Ribosomal_L18A | e7ls2M21 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: Ribosomal_L18A | ECOD (1.6) |
W [auth O2] | Ribosomal_L22e | e7ls2O21 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: Ribosomal_L22e | ECOD (1.6) |
AA [auth S2] | Ribosomal_L26 | e7ls2S21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L26 | ECOD (1.6) |
C [auth C1] | Ribosomal_L6_2 | e7ls2C11 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_2 | ECOD (1.6) |
C [auth C1] | Ribosomal_L6 | e7ls2C12 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
HA [auth Z2] | Ribosomal_L35Ae | e7ls2Z21 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L35Ae | ECOD (1.6) |
IA [auth a2] | Ribosomal_L34e | e7ls2a21 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: Ribosomal_L34e | ECOD (1.6) |
NA [auth f2] | Ribosomal_L39 | e7ls2f21 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: Ribosomal_L39 | ECOD (1.6) |
PA [auth h2] | Ribosomal_L41 | e7ls2h21 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: Ribosomal_L41 | ECOD (1.6) |
RA [auth j2] | Ribosomal_L37ae | e7ls2j21 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37ae | ECOD (1.6) |
E [auth E1] | Ribosomal_L5_C | e7ls2E11 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
YA [auth w2] | Ribosomal_S17_1 | e7ls2w21 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
ZA [auth z2] | Ribosomal_S17e | e7ls2z21 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: Ribosomal_S17e | ECOD (1.6) |
AB [auth o2] | Ribosomal_S2_2 | e7ls2o21 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2_2 | ECOD (1.6) |
CB [auth v2] | S10_plectin | e7ls2v21 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: S10_plectin | ECOD (1.6) |
IB [auth D3] | Ribosomal_S21e | e7ls2D31 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: Ribosomal_S21e | ECOD (1.6) |
JB [auth E3] | Ribosom_S12_S23 | e7ls2E31 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
OB [auth J3] | Ribosomal_S5_C_1 | e7ls2J33 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C_1 | ECOD (1.6) |
OB [auth J3] | Ribosomal_S5_3 | e7ls2J32 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5_3 | ECOD (1.6) |
OB [auth J3] | Ribosomal_S5_2 | e7ls2J31 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: Ribosomal_S5_2 | ECOD (1.6) |
PB [auth K3] | Ribosomal_S6e | e7ls2K31 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_S6e | ECOD (1.6) |
SB [auth N3] | Ribosomal_S13_N | e7ls2N31 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: Ribosomal_S13_N | ECOD (1.6) |
SB [auth N3] | Ribosomal_S15_2 | e7ls2N32 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_2 | ECOD (1.6) |
XB [auth S3] | Ribosomal_S27e | e7ls2S31 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27e | ECOD (1.6) |
YB [auth T3] | Ribosomal_S30 | e7ls2T31 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: Ribosomal_S30 | ECOD (1.6) |
BC [auth j] | Ribosomal_L10 | e7ls2j2 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: Ribosomal_L10 | ECOD (1.6) |
BC [auth j] | Ribosomal_P0_L10e | e7ls2j1 | A: a+b two layers | X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | T: Insertion domain in 60S ribosomal protein rpP0 (L10P) | F: Ribosomal_P0_L10e | ECOD (1.6) |
EC [auth t] | Ribosomal_S7e_N | e7ls2t1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: Ribosomal_S7e_N | ECOD (1.6) |
EC [auth t] | Ribosomal_S7e_C_1 | e7ls2t2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: Ribosomal_S7e_C_1 | ECOD (1.6) |
FC [auth u] | Ribosomal_S8e | e7ls2u1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_S8e | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth D1] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
F [auth F1] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
G [auth G1] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
H [auth H1] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
K [auth C2] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
L [auth D2] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
L [auth D2] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
L [auth D2] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
N [auth F2] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
N [auth F2] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
N [auth F2] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
P [auth H2] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
P [auth H2] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
Q [auth I2] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
Q [auth I2] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
T [auth L2] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
X [auth P2] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
Y [auth Q2] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
Y [auth Q2] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
Y [auth Q2] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
Z [auth R2] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
Z [auth R2] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
Z [auth R2] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
BA [auth T2] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
BA [auth T2] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
CA [auth U2] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
DA [auth V2] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
DA [auth V2] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
EA [auth W2] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
EA [auth W2] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
FA [auth X2] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
FA [auth X2] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
GA [auth Y2] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
GA [auth Y2] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
FB [auth A3] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
GB [auth B3] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
HB [auth C3] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
LB [auth G3] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | - | Family |
MB [auth H3] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
NB [auth I3] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
QB [auth L3] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
QB [auth L3] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
RB [auth M3] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
TB [auth O3] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
UB [auth P3] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
VB [auth Q3] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
ZB [auth U3] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
GC [auth L1] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
A [auth A1] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
J [auth B2] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
M [auth E2] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
O [auth G2] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
O [auth G2] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. | Domain |
O [auth G2] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
R [auth J2] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
R [auth J2] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
S [auth K2] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
B [auth B1] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
U [auth M2] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
W [auth O2] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
AA [auth S2] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
AA [auth S2] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
AA [auth S2] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
C [auth C1] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
HA [auth Z2] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | Domain | |
E [auth E1] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
E [auth E1] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
IB [auth D3] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
JB [auth E3] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
OB [auth J3] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
OB [auth J3] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
PB [auth K3] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
SB [auth N3] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
XB [auth S3] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
DC [auth A] | PF04774 | Hyaluronan / mRNA binding family (HABP4_PAI-RBP1) | Hyaluronan / mRNA binding family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
K [auth C2] | OMU | Parent Component: U |
N [auth F2] | MLZ | Parent Component: LYS :  AA0076 :  N6-methyl-L-lysine MOD:00085 |
OA [auth g2] | MLZ | Parent Component: LYS :  AA0076 , AA0076 :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 |
TA [auth m2] | 4AC | AA0076 , AA0076 | : 
TA [auth m2] | A2M | Parent Component: A :  AA0076 , AA0076 |
TA [auth m2] | B8N | AA0076 , AA0076 | : 
TA [auth m2] | OMC | Parent Component: C :  AA0076 , AA0076 |
TA [auth m2] | OMG | Parent Component: G :  AA0076 , AA0076 |
TA [auth m2] | OMU | Parent Component: U :  AA0076 , AA0076 |
TA [auth m2] | PSU | Parent Component: U :  AA0076 , AA0076 |
TA [auth m2] | UR3 | Parent Component: U :  AA0076 , AA0076 |
AC [auth m] | DDE | Parent Component: HIS :  AA0076 , AA0076 , AA0040 :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine MOD:00049 |
I [auth A2] | 1MA | Parent Component: A :  AA0076 , AA0076 , AA0040 |
I [auth A2] | 2MG | Parent Component: G :  AA0076 , AA0076 , AA0040 |
I [auth A2] | 5MC | Parent Component: C :  AA0076 , AA0076 , AA0040 |
I [auth A2] | 6MZ | Parent Component: A :  AA0076 , AA0076 , AA0040 |
I [auth A2] | A2M | Parent Component: A :  AA0076 , AA0076 , AA0040 |
I [auth A2] | B8Q | Parent Component: C |
I [auth A2] | B8T | Parent Component: C :  AA0076 , AA0076 , AA0040 |
I [auth A2] | B8W | Parent Component: G :  AA0076 , AA0076 , AA0040 |
I [auth A2] | B9B | Parent Component: G :  AA0076 , AA0076 , AA0040 |
I [auth A2] | B9H | Parent Component: C |
I [auth A2] | E6G | Parent Component: G :  AA0076 , AA0076 , AA0040 |
I [auth A2] | E7G | Parent Component: G :  AA0076 , AA0076 , AA0040 |
I [auth A2] | G7M | Parent Component: G :  AA0076 , AA0076 , AA0040 |
I [auth A2] | I4U | Parent Component: U :  AA0076 , AA0076 , AA0040 |
I [auth A2] | MHG | Parent Component: G :  AA0076 , AA0076 , AA0040 |
I [auth A2] | OMC | Parent Component: C :  AA0076 , AA0076 , AA0040 |
I [auth A2] | OMG | Parent Component: G :  AA0076 , AA0076 , AA0040 |
I [auth A2] | OMU | Parent Component: U :  AA0076 , AA0076 , AA0040 |
I [auth A2] | P7G | Parent Component: G :  AA0076 , AA0076 , AA0040 |
I [auth A2] | PSU | Parent Component: U :  AA0076 , AA0076 , AA0040 |
I [auth A2] | UR3 | Parent Component: U :  AA0076 , AA0076 , AA0040 |