9CL9 | pdb_00009cl9

WT 12C IM fraction, B-b3 with RluB bound


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth J]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
C [auth T]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
B [auth R]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
L [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
K [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
J [auth S]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
A [auth Q]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
H [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
G [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
E [auth A]PF00849RNA pseudouridylate synthase (PseudoU_synth_2)RNA pseudouridylate synthase- Family
E [auth A]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
D [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
C [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
B [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
L [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
K [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
K [auth U]PF00467KOW motif (KOW)KOW motif- Family
J [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
A [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth J]Large ribosomal subunit protein uL13
H [auth E]Large ribosomal subunit protein uL4
G [auth D]Large ribosomal subunit protein uL3
F [auth CA]23S rRNA---
E [auth A]Ribosomal large subunit pseudouridine synthase B
D [auth 2]Large ribosomal subunit protein bL34
C [auth T]Large ribosomal subunit protein uL23
B [auth R]Large ribosomal subunit protein bL21
L [auth Y]Large ribosomal subunit protein uL29
K [auth U]Large ribosomal subunit protein uL24
J [auth S]Large ribosomal subunit protein uL22
A [auth Q]Large ribosomal subunit protein bL20

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
I [auth J]IPR005822Large ribosomal subunit protein uL13Family
I [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
I [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
H [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
H [auth E]IPR002136Large ribosomal subunit protein uL4Family
H [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
G [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
G [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
G [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
G [auth D]IPR000597Large ribosomal subunit protein uL3Family
E [auth A]IPR020103Pseudouridine synthase, catalytic domain superfamilyHomologous Superfamily
E [auth A]IPR002942RNA-binding S4 domainDomain
E [auth A]IPR050343Ribosomal RNA Pseudouridine Synthase RsuAFamily
E [auth A]IPR000748Pseudouridine synthase, RsuA/RluB/E/FFamily
E [auth A]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth A]IPR006145Pseudouridine synthase, RsuA/RluA-likeDomain
E [auth A]IPR018496Pseudouridine synthase, RsuA/RluB/E/F, conserved siteConserved Site
D [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
D [auth 2]IPR000271Large ribosomal subunit protein bL34Family
C [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
C [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
C [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
C [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
B [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
B [auth R]IPR001787Large ribosomal subunit protein bL21Family
B [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
B [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
L [auth Y]IPR050063Universal ribosomal protein uL29Family
L [auth Y]IPR001854Large ribosomal subunit protein uL29Family
L [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
L [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
K [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
K [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth U]IPR003256Large ribosomal subunit protein uL24Family
K [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
K [auth U]IPR005824KOWDomain
K [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
J [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
J [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
J [auth S]IPR001063Large ribosomal subunit protein uL22Family
J [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
J [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
A [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
A [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
A [auth Q]IPR005813Large ribosomal subunit protein bL20Family