9CL9 | pdb_00009cl9

WT 12C IM fraction, B-b3 with RluB bound

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.04 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental, in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

50S ribosome assembly intermediates at low temperature reveal bound RluB

Lee, J., Sheng, K., Williamson, J.R., Gebert, L.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL20A [auth Q]117Escherichia coli K-12Mutation(s): 0 
UniProt
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UniProt GroupP0A7L3
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL21B [auth R]103Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL23C [auth T]90Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL34D [auth 2]37Escherichia coli K-12Mutation(s): 0 
UniProt
Find proteins for P0A7P5 (Escherichia coli (strain K12))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal large subunit pseudouridine synthase BE [auth A]283Escherichia coli K-12Mutation(s): 0 
EC: 5.4.99.22
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Find proteins for P37765 (Escherichia coli (strain K12))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL3G [auth D]209Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL4H [auth E]201Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL13I [auth J]142Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL22J [auth S]110Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL24K [auth U]102Escherichia coli K-12Mutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL29L [auth Y]60Escherichia coli K-12Mutation(s): 0 
UniProt
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UniProt GroupP0A7M6
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Entity ID: 6
MoleculeChains LengthOrganismImage
23S rRNAF [auth CA]2,904Escherichia coli K-12
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.04 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTCoot
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM136412
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM053757

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-24
    Type: Initial release