9CPB | pdb_00009cpb

Atomic model of bovine Fallopian tube cilia doublet microtubule (48-nm periodicity)


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 1A]PF00514Armadillo/beta-catenin-like repeat (Arm)Armadillo/beta-catenin-like repeat- Repeat
AA [auth 2K],
BA [auth 2L],
CA [auth 2M],
Z [auth 2J]
PF13868Trichohyalin-plectin-homology domain (TPH)Trichohyalin-plectin-homology domain- Coiled-coil
DA [auth 2O],
EA [auth 2P],
FA [auth 2Q]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
GA [auth 2S],
HA [auth 2T]
PF13868Trichohyalin-plectin-homology domain (TPH)Trichohyalin-plectin-homology domain- Coiled-coil
IA [auth 2V],
JA [auth 2W],
KA [auth 2X],
LA [auth 2Y]
PF14825Cilia- and flagella-associated protein 77 (CFAP77)Cilia- and flagella-associated protein 77- Family
MA [auth 3A]PF15139Protein CFAP95 (CFAP95)Protein CFAP95- Family
NA [auth 3C],
OA [auth 3D]
PF15239Cilia-and flagella-associated protein 96 (CFAP96-like)Cilia-and flagella-associated protein 96- Family
PA [auth 3F]PF13202EF hand (EF-hand_5)EF handDomain
PA [auth 3F]PF13499EF-hand domain pair (EF-hand_7)EF-hand domain pairDomain
QA [auth 3H]PF13499EF-hand domain pair (EF-hand_7)EF-hand domain pairDomain
RA [auth 3J],
SA [auth 3K],
TA [auth 3L]
PF06565DM10 domain (DM10_dom)DM10 domainThis entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the ...This entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the DM10 domain [1,2], and in uncharacterised proteins including Rib72 from Chlamydomonas and EF-hand domain-containing protein 1/EF-hand domain-containing family member C2 (EFHC1/2) from mammals, which contain multiple copies of DM10 domains. In Chlamydomonas, and possibly mammals, DM10 domain-containing proteins are tightly bound to the flagellar doublet microtubules. This suggests that DM10 domains might act as flagellar NDK regulatory modules or as units specifically involved in axonemal targeting or assembly [3,4]. This domain have a PH-like fold which includes seven beta strands, with a short 3-4 residue helix after the first strand, and a more extended alpha helical region at the C terminus [2,3].
Domain
B [auth 1D],
C [auth 1E],
D [auth 1F]
PF21773ODAD1 central coiled coil region (ODAD1_CC)ODAD1 central coiled coil regionThis domain, previously know as DUF6872, is found in Outer dynein arm-docking complex subunit 1 (ODAD1, CCDC114) from humans and similar eukaryotic proteins. In mammals, CCDC114 forms a hetero-coiled coil with ODAD1/CCDC151 within the A07/A08 interpr ...This domain, previously know as DUF6872, is found in Outer dynein arm-docking complex subunit 1 (ODAD1, CCDC114) from humans and similar eukaryotic proteins. In mammals, CCDC114 forms a hetero-coiled coil with ODAD1/CCDC151 within the A07/A08 interprotofilament cleft, analogous to the DC1/2 coiled coil of the trimeric ODA-DC observed in C. reinhardtii axoneme [1,2]. DC2 is a homolog of the human ODAD1/CCDC151 and in C.reinhardtii it is a part of the ODA-DC that consists of three proteins: DC1, DC2, and DC3. The N-terminal halves of DC1 and DC2 form a microtubule-bound heteromeric coiled-coil [1,3].
Domain
UA [auth 3N],
VA [auth 3O],
WA [auth 3P],
XA [auth 3Q]
PF06565DM10 domain (DM10_dom)DM10 domainThis entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the ...This entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the DM10 domain [1,2], and in uncharacterised proteins including Rib72 from Chlamydomonas and EF-hand domain-containing protein 1/EF-hand domain-containing family member C2 (EFHC1/2) from mammals, which contain multiple copies of DM10 domains. In Chlamydomonas, and possibly mammals, DM10 domain-containing proteins are tightly bound to the flagellar doublet microtubules. This suggests that DM10 domains might act as flagellar NDK regulatory modules or as units specifically involved in axonemal targeting or assembly [3,4]. This domain have a PH-like fold which includes seven beta strands, with a short 3-4 residue helix after the first strand, and a more extended alpha helical region at the C terminus [2,3].
Domain
AB [auth 3U],
BB [auth 3V],
YA [auth 3S],
ZA [auth 3T]
PF13864Calmodulin-binding (Enkurin)Calmodulin-binding- Family
IB [auth 4D]PF14886FAM183A and FAM183B related (FAM183)FAM183A and FAM183B related- Family
JB [auth 4F],
KB [auth 4G]
PF13868Trichohyalin-plectin-homology domain (TPH)Trichohyalin-plectin-homology domain- Coiled-coil
LB [auth 4I],
MB [auth 4J]
PF00334Nucleoside diphosphate kinase (NDK)Nucleoside diphosphate kinaseDomain
PF10274Parkin co-regulated protein (ParcG)Parkin co-regulated protein- Repeat
YB [auth 4Y]PF14892Piercer of microtubule wall 1/2 (PIRC1_2)Piercer of microtubule wall 1/2- Family
E [auth 1H],
F [auth 1I]
PF13868Trichohyalin-plectin-homology domain (TPH)Trichohyalin-plectin-homology domain- Coiled-coil
AC [auth 5B],
ZB [auth 5A]
PF05914RIB43A (RIB43A)RIB43A- Family
PF15120Sperm acrosome-associated protein 9 (SPACA9)Sperm acrosome-associated protein 9- Family
IC [auth 5L],
JC [auth 5M],
KC [auth 5N],
LC [auth 5O]
PF03148Tektin family (Tektin)Tektin family- Family
PF03148Tektin family (Tektin)Tektin family- Family
PF03148Tektin family (Tektin)Tektin family- Family
PF03148Tektin family (Tektin)Tektin family- Family
YD [auth 7K],
ZD [auth 7L]
PF15074Cilia and flagella associated protein 90 (CFAP90)Cilia and flagella associated protein 90- Family
G [auth 1K],
H [auth 1L]
PF22595Cilia and flagella associated protein 107 (CFAP107)Cilia and flagella associated protein 107- Family
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Domain
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).
Domain
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Domain
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).
Domain
L [auth 1R]PF15104Cilia- and flagella-associated protein 141 (CFAP141)Cilia- and flagella-associated protein 141- Family
PF05018CFA20 domain (CFA20_dom)CFA20 domainThis domain is characteristic of cilia- and flagella-associated protein 20 (CFA20). CFA20 is a cilium- and flagellum-specific protein that plays a role in axonemal structure organisation and motility [1,2]. In Chlamydomonas reinhardtii, it stabilises ...This domain is characteristic of cilia- and flagella-associated protein 20 (CFA20). CFA20 is a cilium- and flagellum-specific protein that plays a role in axonemal structure organisation and motility [1,2]. In Chlamydomonas reinhardtii, it stabilises outer doublet microtubules (DMTs) of the axoneme and may work as a scaffold for intratubular proteins, such as tektin and PACRG, to produce the beak structures in DMT1 [2,3]. Other proteins contain a domain with homology to CFA20. WDR90/POC16 contains such a domain in its N terminus, followed by a large C-terminal domain with multiple WD40 repeats [2]. This domain is also present in the N terminus of uncharacterised protein C3orf67.
Domain
U [auth 2D],
V [auth 2E]
PF13499EF-hand domain pair (EF-hand_7)EF-hand domain pairDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1A]Armadillo repeat containing 4-
W [auth 2F],
X [auth 2G],
Y [auth 2H]
CFAP276-
AA [auth 2K],
BA [auth 2L],
CA [auth 2M],
Z [auth 2J]
Cilia and flagella associated protein 45
DA [auth 2O],
EA [auth 2P],
FA [auth 2Q]
Cilia and flagella associated protein 52-
GA [auth 2S],
HA [auth 2T]
Methyl-CpG binding domain protein 1-
IA [auth 2V],
JA [auth 2W],
KA [auth 2X],
LA [auth 2Y]
Cilia and flagella associated protein 77-
MA [auth 3A]CFAP95-
NA [auth 3C],
OA [auth 3D]
Cilia-and flagella-associated protein 96- -
PA [auth 3F]EF-hand calcium-binding domain-containing protein 1
QA [auth 3H]EF-hand calcium binding domain 6
RA [auth 3J],
SA [auth 3K],
TA [auth 3L]
EF-hand domain containing 1
B [auth 1D],
C [auth 1E],
D [auth 1F]
Coiled-coil domain containing 114-
UA [auth 3N],
VA [auth 3O],
WA [auth 3P],
XA [auth 3Q]
EFHC2-
AB [auth 3U],
BB [auth 3V],
YA [auth 3S],
ZA [auth 3T]
Enkurin, TRPC channel interacting protein
Protein FAM166B- -
IB [auth 4D]Cilia- and flagella-associated protein 144
JB [auth 4F],
KB [auth 4G]
Meiosis-specific nuclear structural protein 1-
LB [auth 4I],
MB [auth 4J]
Nucleoside diphosphate kinase 7
NB [auth 4K],
OB [auth 4L],
PB [auth 4M]
Outer dynein arm-docking complex subunit 3-
PACRG protein
WB [auth 4V],
XB [auth 4W]
Pierce1-
YB [auth 4Y]Pierce2-
E [auth 1H],
F [auth 1I]
Coiled-coil domain containing 173-
AC [auth 5B],
ZB [auth 5A]
RIB43A-like with coiled-coils protein 2-
Sperm acrosome associated 9- -
IC [auth 5L],
JC [auth 5M],
KC [auth 5N],
LC [auth 5O]
Tektin-1-
Tektin-2-
Tektin-3-
Tektin-4-
QD [auth 6Y],
RD [auth 6Z]
TTC25 protein-
SD [auth 7C],
TD [auth 7D],
UD [auth 7E],
VD [auth 7F]
Ciliary microtubule associated protein 1A---
WD [auth 7H],
XD [auth 7I]
Ciliary microtubule associated protein 1C- -
YD [auth 7K],
ZD [auth 7L]
Cilia and flagella associated protein 90-
G [auth 1K],
H [auth 1L]
Uncharacterized protein C1orf158 homolog-
AE [auth 7N]Sperm associated antigen 8
Tubulin beta-4B chain
Tubulin alpha-1D chain
I [auth 1N],
J [auth 1O],
K [auth 1P]
Protein Flattop-
L [auth 1R]CFAP141-
M [auth 1T],
N [auth 1U]
Cilia and flagella associated protein 161-
Cilia- and flagella-associated protein 20-
U [auth 2D],
V [auth 2E]
EF-hand domain family member B

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 1A]IPR011989Armadillo-like helicalHomologous Superfamily
A [auth 1A]IPR016024Armadillo-type foldHomologous Superfamily
A [auth 1A]IPR000225ArmadilloRepeat
W [auth 2F],
X [auth 2G],
Y [auth 2H]
IPR022179Cilia- and flagella-associated protein 276Family
AA [auth 2K],
BA [auth 2L],
CA [auth 2M],
Z [auth 2J]
IPR043597Trichohyalin-plectin-homology domainDomain
AA [auth 2K],
BA [auth 2L],
CA [auth 2M],
Z [auth 2J]
IPR033253Cilia- and flagella-associated protein 45Family
DA [auth 2O],
EA [auth 2P],
FA [auth 2Q]
IPR001680WD40 repeatRepeat
DA [auth 2O],
EA [auth 2P],
FA [auth 2Q]
IPR019775WD40 repeat, conserved siteConserved Site
DA [auth 2O],
EA [auth 2P],
FA [auth 2Q]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DA [auth 2O],
EA [auth 2P],
FA [auth 2Q]
IPR050630WD repeat Echinoderm Microtubule-associated Protein-likeFamily
DA [auth 2O],
EA [auth 2P],
FA [auth 2Q]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
GA [auth 2S],
HA [auth 2T]
IPR043596CFAP53/TCHPFamily
GA [auth 2S],
HA [auth 2T]
IPR043597Trichohyalin-plectin-homology domainDomain
IA [auth 2V],
JA [auth 2W],
KA [auth 2X],
LA [auth 2Y]
IPR029147Cilia- and flagella-associated protein 77Family
MA [auth 3A]IPR027905Cilia- and flagella-associated protein 95Family
NA [auth 3C],
OA [auth 3D]
IPR029358Cilia-and flagella-associated protein 96Family
PA [auth 3F]IPR028846Recoverin familyFamily
PA [auth 3F]IPR018247EF-Hand 1, calcium-binding siteBinding Site
PA [auth 3F]IPR002048EF-hand domainDomain
PA [auth 3F]IPR011992EF-hand domain pairHomologous Superfamily
QA [auth 3H]IPR015070DJBP, EF-hand domainDomain
QA [auth 3H]IPR002048EF-hand domainDomain
QA [auth 3H]IPR052603EF-hand calcium-binding domain-containing protein 6Family
QA [auth 3H]IPR011992EF-hand domain pairHomologous Superfamily
RA [auth 3J],
SA [auth 3K],
TA [auth 3L]
IPR006602DM10 domainDomain
RA [auth 3J],
SA [auth 3K],
TA [auth 3L]
IPR002048EF-hand domainDomain
RA [auth 3J],
SA [auth 3K],
TA [auth 3L]
IPR011992EF-hand domain pairHomologous Superfamily
RA [auth 3J],
SA [auth 3K],
TA [auth 3L]
IPR040193EF-hand domain-containing protein EFHC1/EFHC2/EFHBFamily
B [auth 1D],
C [auth 1E],
D [auth 1F]
IPR051876Outer dynein arm-docking/Coiled-coil domain-containing proteinFamily
B [auth 1D],
C [auth 1E],
D [auth 1F]
IPR049258ODAD1, central coiled coil regionDomain
UA [auth 3N],
VA [auth 3O],
WA [auth 3P],
XA [auth 3Q]
IPR006602DM10 domainDomain
UA [auth 3N],
VA [auth 3O],
WA [auth 3P],
XA [auth 3Q]
IPR011992EF-hand domain pairHomologous Superfamily
UA [auth 3N],
VA [auth 3O],
WA [auth 3P],
XA [auth 3Q]
IPR040193EF-hand domain-containing protein EFHC1/EFHC2/EFHBFamily
AB [auth 3U],
BB [auth 3V],
YA [auth 3S],
ZA [auth 3T]
IPR052102Enkurin domain-containing proteinFamily
AB [auth 3U],
BB [auth 3V],
YA [auth 3S],
ZA [auth 3T]
IPR027012Enkurin domainDomain
IPR018902Ciliary microtubule inner protein 2A-C-like domainDomain
IB [auth 4D]IPR029214Cilia- and flagella-associated protein 144Family
JB [auth 4F],
KB [auth 4G]
IPR043597Trichohyalin-plectin-homology domainDomain
JB [auth 4F],
KB [auth 4G]
IPR026504Meiosis-specific nuclear structural protein 1Family
LB [auth 4I],
MB [auth 4J]
IPR035525NDPK7, first NDPk domainDomain
LB [auth 4I],
MB [auth 4J]
IPR034907Nucleoside diphosphate kinase-like domainDomain
LB [auth 4I],
MB [auth 4J]
IPR037993NDPK7, second NDPk domainDomain
LB [auth 4I],
MB [auth 4J]
IPR006602DM10 domainDomain
LB [auth 4I],
MB [auth 4J]
IPR036850Nucleoside diphosphate kinase-like domain superfamilyHomologous Superfamily
LB [auth 4I],
MB [auth 4J]
IPR001564Nucleoside diphosphate kinaseFamily
LB [auth 4I],
MB [auth 4J]
IPR011410Nucleoside diphosphate kinase 7Family
NB [auth 4K],
OB [auth 4L],
PB [auth 4M]
IPR033192Outer dynein arm-docking complex subunit 3Family
IPR019399Parkin co-regulated proteinFamily
WB [auth 4V],
XB [auth 4W]
IPR026507Piercer of microtubule wall 1/2Family
YB [auth 4Y]IPR026507Piercer of microtubule wall 1/2Family
E [auth 1H],
F [auth 1I]
IPR043597Trichohyalin-plectin-homology domainDomain
E [auth 1H],
F [auth 1I]
IPR039986Cilia- and flagella- associated protein 210Family
AC [auth 5B],
ZB [auth 5A]
IPR008805RIB43AFamily
IPR027818Sperm acrosome-associated protein 9Family
IC [auth 5L],
JC [auth 5M],
KC [auth 5N],
LC [auth 5O]
IPR000435TektinsFamily
IC [auth 5L],
JC [auth 5M],
KC [auth 5N],
LC [auth 5O]
IPR048256Tektin-likeFamily
IPR000435TektinsFamily
IPR048256Tektin-likeFamily
IPR000435TektinsFamily
IPR048256Tektin-likeFamily
IPR000435TektinsFamily
IPR048256Tektin-likeFamily
QD [auth 6Y],
RD [auth 6Z]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
QD [auth 6Y],
RD [auth 6Z]
IPR019734Tetratricopeptide repeatRepeat
QD [auth 6Y],
RD [auth 6Z]
IPR040111Outer dynein arm-docking complex subunit 4Family
WD [auth 7H],
XD [auth 7I]
IPR051291Ciliary Microtubule AssociatedFamily
WD [auth 7H],
XD [auth 7I]
IPR010736Sperm-tail PG-rich repeatRepeat
YD [auth 7K],
ZD [auth 7L]
IPR027901Cilia and flagella associated protein 90Family
G [auth 1K],
H [auth 1L]
IPR054709Cilia- and flagella-associated protein 107Family
G [auth 1K],
H [auth 1L]
IPR037662Cilia- and flagella-associated protein 68/107Family
AE [auth 7N]IPR026124Sperm-associated antigen 8Family
IPR003008Tubulin/FtsZ, GTPase domainDomain
IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
IPR017975Tubulin, conserved siteConserved Site
IPR000217TubulinFamily
IPR023123Tubulin, C-terminalHomologous Superfamily
IPR002453Beta tubulinFamily
IPR013838Beta tubulin, autoregulation binding siteBinding Site
IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
IPR003008Tubulin/FtsZ, GTPase domainDomain
IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
IPR017975Tubulin, conserved siteConserved Site
IPR002452Alpha tubulinFamily
IPR000217TubulinFamily
IPR023123Tubulin, C-terminalHomologous Superfamily
IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
I [auth 1N],
J [auth 1O],
K [auth 1P]
IPR038797Protein FlattopFamily
L [auth 1R]IPR029375Cilia- and flagella-associated protein 141Family
M [auth 1T],
N [auth 1U]
IPR055325Cilia- and flagella-associated protein 161Family
IPR040441Cilia- and flagella-associated protein 20/CFAP20DCFamily
IPR007714CFA20 domainDomain
U [auth 2D],
V [auth 2E]
IPR018247EF-Hand 1, calcium-binding siteBinding Site
U [auth 2D],
V [auth 2E]
IPR002048EF-hand domainDomain
U [auth 2D],
V [auth 2E]
IPR011992EF-hand domain pairHomologous Superfamily
U [auth 2D],
V [auth 2E]
IPR040193EF-hand domain-containing protein EFHC1/EFHC2/EFHBFamily