9ED4 | pdb_00009ed4

A composite map of mTORC1-Rag-Ragultor-4EBP1 on membrane

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
SSCOP2B SuperfamilyRoadblock/LC7 domain-like 8092495 3001810 SCOP2B (2022-06-29)
G [auth J]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8092495 3001810 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyRoadblock/LC7 domain-like 8040242 3001810 SCOP2B (2022-06-29)
F [auth H]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8040242 3001810 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyRoadblock/LC7 domain-like 8088845 3001810 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8088845 3001810 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyRas-like P-loop GTPases 8093372 3002022 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyRoadblock/LC7 domain-like 8093374 3001810 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRoadblock/LC7 domain-like 8093374 3001810 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRas-like P-loop GTPases 8093372 3002022 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyFKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 8036936 3001600 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyFKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 8036936 3001600 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyRas-like P-loop GTPases 8057364 3002022 SCOP2B (2022-06-29)
B [auth L]SCOP2B SuperfamilyRas-like P-loop GTPases 8057364 3002022 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyRas-like P-loop GTPases 8093371 3002022 SCOP2B (2022-06-29)
J [auth E]SCOP2B SuperfamilyRas-like P-loop GTPases 8093371 3002022 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth C],
U		PF14538Raptor N-terminal CASPase like domain (Raptor_N)Raptor N-terminal CASPase like domainThis domain is found at the N-terminus of the Raptor protein. It has been identified to have a CASPase like structure [1]. It conserves the characteristic cys/his dyad of the caspases suggesting it may have a peptidase activity. Domain
I [auth C],
U		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
I [auth C],
U		PF02985HEAT repeat (HEAT)HEAT repeat- Repeat
G [auth J],
S		PF16672Ragulator complex protein LAMTOR5 (LAMTOR5)Ragulator complex protein LAMTOR5Domain
F [auth H],
R		PF08923Mitogen-activated protein kinase kinase 1 interacting (MAPKK1_Int)Mitogen-activated protein kinase kinase 1 interactingMitogen-activated protein kinase kinase 1 interacting protein is a small subcellular adaptor protein required for MAPK signaling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a tw ...Mitogen-activated protein kinase kinase 1 interacting protein is a small subcellular adaptor protein required for MAPK signaling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer [1].
Domain
E [auth G],
Q		PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain
D, P
PF04670Gtr1/RagA G protein conserved region (Gtr1_RagA)Gtr1/RagA G protein conserved regionGTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is ...GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B [1,2,3,4].
Domain
C [auth A],
O		PF02260FATC domain (FATC)FATC domain- Family
C [auth A],
O		PF08771FKBP12-rapamycin binding domain (FRB_dom)FKBP12-rapamycin binding domainThe macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapa ...The macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapamycin binding domain (FRB) of the TOR proteins. This entry represents the FRB domain [1, 2].
Domain
C [auth A],
O		PF00454Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase)Phosphatidylinositol 3- and 4-kinase- Family
C [auth A],
O		PF11865Serine/threonine-protein kinase mTOR domain (mTOR_dom)Serine/threonine-protein kinase mTOR domain- Repeat
C [auth A],
O		PF02259FAT domain (FAT)FAT domain- Repeat
B [auth L],
N		PF00071Ras family (Ras)Ras familyIncludes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motili ...Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1].
Domain
J [auth E],
V		PF04670Gtr1/RagA G protein conserved region (Gtr1_RagA)Gtr1/RagA G protein conserved regionGTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is ...GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B [1,2,3,4].
Domain
A [auth B],
M		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth C],
U		Regulatory-associated protein of mTOR
H [auth K],
T		Eukaryotic translation initiation factor 4E-binding protein 1
G [auth J],
S		Ragulator complex protein LAMTOR5-
F [auth H],
R		Ragulator complex protein LAMTOR3
E [auth G],
Q		Ragulator complex protein LAMTOR2
D, P
Ras-related GTP-binding protein A
C [auth A],
O		Serine/threonine-protein kinase mTOR
B [auth L],
N		GTP-binding protein Rheb
L [auth I],
X		Ragulator complex protein LAMTOR4-
K [auth F],
W		Ragulator complex protein LAMTOR1
J [auth E],
V		Ras-related GTP-binding protein C
A [auth B],
M		Target of rapamycin complex subunit LST8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth C],
U		IPR016024Armadillo-type foldHomologous Superfamily
I [auth C],
U		IPR004083Regulatory associated protein of TORFamily
I [auth C],
U		IPR029347Raptor, N-terminal CASPase-like domainDomain
I [auth C],
U		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
I [auth C],
U		IPR000357HEAT repeatRepeat
I [auth C],
U		IPR011989Armadillo-like helicalHomologous Superfamily
I [auth C],
U		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
I [auth C],
U		IPR001680WD40 repeatRepeat
H [auth K],
T		IPR008606Eukaryotic translation initiation factor 4E bindingFamily
G [auth J],
S		IPR024135Ragulator complex protein LAMTOR5Family
F [auth H],
R		IPR015019Ragulator complex protein LAMTOR3Family
E [auth G],
Q		IPR037587Ragulator complex protein LAMTOR2-likeFamily
E [auth G],
Q		IPR004942Roadblock/LAMTOR2 domainDomain
D, P
IPR039397RagA/BFamily
D, P
IPR006762Gtr1/RagA G proteinFamily
D, P
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth A],
O		IPR016024Armadillo-type foldHomologous Superfamily
C [auth A],
O		IPR009076FKBP12-rapamycin binding domainDomain
C [auth A],
O		IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
C [auth A],
O		IPR036940Phosphatidylinositol 3-/4-kinase, catalytic domain superfamilyHomologous Superfamily
C [auth A],
O		IPR014009PIK-related kinase, FAT domainDomain
C [auth A],
O		IPR026683Serine/threonine-protein kinase TOR, catalytic domainDomain
C [auth A],
O		IPR003151PIK-related kinase, FATDomain
C [auth A],
O		IPR036738FKBP12-rapamycin binding domain superfamilyHomologous Superfamily
C [auth A],
O		IPR003152FATC domainDomain
C [auth A],
O		IPR024585Serine/threonine-protein kinase mTOR domainDomain
C [auth A],
O		IPR011989Armadillo-like helicalHomologous Superfamily
C [auth A],
O		IPR000403Phosphatidylinositol 3-/4-kinase, catalytic domainDomain
C [auth A],
O		IPR050517DNA Damage Response and Repair KinaseFamily
C [auth A],
O		IPR018936Phosphatidylinositol 3-/4-kinase, conserved siteConserved Site
C [auth A],
O		IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
B [auth L],
N		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth L],
N		IPR005225Small GTP-binding domainDomain
B [auth L],
N		IPR020849Small GTPase, Ras-typeFamily
B [auth L],
N		IPR001806Small GTPaseFamily
L [auth I],
X		IPR034601Ragulator complex protein LAMTOR4Family
K [auth F],
W		IPR028209LAMTOR1/MEH1Family
J [auth E],
V		IPR006762Gtr1/RagA G proteinFamily
J [auth E],
V		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
J [auth E],
V		IPR039400RagC/DFamily
A [auth B],
M		IPR019775WD40 repeat, conserved siteConserved Site
A [auth B],
M		IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
A [auth B],
M		IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
A [auth B],
M		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth B],
M		IPR001680WD40 repeatRepeat
A [auth B],
M		IPR037588Target of rapamycin complex subunit LST8Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth C],
U		Pharos:  Q8N122
H [auth K],
T		Pharos:  Q13541
G [auth J],
S		Pharos:  O43504
F [auth H],
R		Pharos:  Q9UHA4
E [auth G],
Q		Pharos:  Q9Y2Q5
D, P
Pharos:  Q7L523
C [auth A],
O		Pharos:  P42345
B [auth L],
N		Pharos:  Q15382
L [auth I],
X		Pharos:  Q0VGL1
K [auth F],
W		Pharos:  Q6IAA8
J [auth E],
V		Pharos:  Q9HB90
A [auth B],
M		Pharos:  Q9BVC4