1DOG

REFINED STRUCTURE FOR THE COMPLEX OF 1-DEOXYNOJIRIMYCIN WITH GLUCOAMYLASE FROM (ASPERGILLUS AWAMORI) VAR. X100 TO 2.4 ANGSTROMS RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.8957.44

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 116.6α = 90
b = 103.6β = 90
c = 48.3γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.31010.119
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor28.5
p_staggered_tor14.2
p_scangle_it2.817
p_planar_tor2.2
p_scbond_it1.865
p_mcangle_it1.037
p_mcbond_it0.605
p_singtor_nbd0.225
p_xhyhbond_nbd0.201
p_multtor_nbd0.159
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor28.5
p_staggered_tor14.2
p_scangle_it2.817
p_planar_tor2.2
p_scbond_it1.865
p_mcangle_it1.037
p_mcbond_it0.605
p_singtor_nbd0.225
p_xhyhbond_nbd0.201
p_multtor_nbd0.159
p_chiral_restr0.137
p_planar_d0.04
p_angle_d0.03
p_bond_d0.012
p_plane_restr0.012
p_angle_deg
p_hb_or_metal_coord
p_xyhbond_nbd
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3562
Nucleic Acid Atoms
Solvent Atoms605
Heterogen Atoms287

Software

Software
Software NamePurpose
PROLSQrefinement