2BO6

DISSECTION OF MANNOSYLGLYCERATE SYNTHASE: AN ARCHETYPAL MANNOSYLTRANSFERASE


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
10.2 M TRI-SODIUM CITRATE, 0.1 M SODIUM ACETATE TRIHYDRATE, PH 4.6, 30% (V/V) MPD
Crystal Properties
Matthews coefficientSolvent content
6.380.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 150.228α = 90
b = 150.228β = 90
c = 154.285γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.436.99980.07266.2741452
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.49990.4845.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.4536.9969404369498.60.2550.2530.277RANDOM28.73
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2-0.1-0.20.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.795
r_scangle_it1.977
r_angle_refined_deg1.367
r_scbond_it1.302
r_angle_other_deg0.887
r_mcangle_it0.636
r_mcbond_it0.393
r_symmetry_vdw_refined0.318
r_symmetry_hbond_refined0.286
r_symmetry_vdw_other0.264
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.795
r_scangle_it1.977
r_angle_refined_deg1.367
r_scbond_it1.302
r_angle_other_deg0.887
r_mcangle_it0.636
r_mcbond_it0.393
r_symmetry_vdw_refined0.318
r_symmetry_hbond_refined0.286
r_symmetry_vdw_other0.264
r_nbd_other0.222
r_nbd_refined0.207
r_xyhbond_nbd_refined0.174
r_nbtor_other0.086
r_chiral_restr0.084
r_bond_refined_d0.018
r_bond_other_d0.009
r_gen_planes_refined0.006
r_gen_planes_other0.005
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6276
Nucleic Acid Atoms
Solvent Atoms100
Heterogen Atoms16

Software

Software
Software NamePurpose
HKLdata reduction
HKLdata scaling
SHELXphasing
SOLVEphasing
REFMACrefinement