X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.42980.1M sodium citrate, 20.4% PEG4000, 16% isopropanol, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.9257.84

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.345α = 90
b = 65.345β = 90
c = 146.772γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152009-06-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.9717APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.19099.90.0713.419.711489
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.181000.32620.31113

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT2.144.811142054699.760.2070.2060.23RANDOM38.226
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.010.511.01-1.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.288
r_dihedral_angle_4_deg18.456
r_dihedral_angle_3_deg17.653
r_scangle_it8.834
r_dihedral_angle_1_deg5.567
r_scbond_it5.321
r_mcangle_it3.906
r_mcbond_it2.138
r_angle_refined_deg1.435
r_angle_other_deg0.818
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.288
r_dihedral_angle_4_deg18.456
r_dihedral_angle_3_deg17.653
r_scangle_it8.834
r_dihedral_angle_1_deg5.567
r_scbond_it5.321
r_mcangle_it3.906
r_mcbond_it2.138
r_angle_refined_deg1.435
r_angle_other_deg0.818
r_mcbond_other0.658
r_chiral_restr0.084
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms886
Nucleic Acid Atoms
Solvent Atoms56
Heterogen Atoms26

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MLPHAREphasing
DMphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection