3W9T

pore-forming CEL-III


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION4.229330% PEG400, 0.1M CdCl2, 0.1M sodium acetate, 10mM CaCl2, 0.1M lactulose, pH 4.2, VAPOR DIFFUSION, temperature 293K
Crystal Properties
Matthew coefficientSolvent content
4.0169.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 219.8α = 90
b = 228.65β = 127.13
c = 133.02γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 315r2010-10-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.953.598.60.17.13.9113863
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.93.0699.30.41123.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRTHROUGHOUT2.948.2107985569198.410.241080.239420.27305RANDOM80.149
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.640.10.39-0.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.536
r_dihedral_angle_3_deg18.109
r_dihedral_angle_4_deg17.854
r_dihedral_angle_1_deg8.651
r_angle_refined_deg1.595
r_chiral_restr0.134
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_sphericity_bonded
r_angle_other_deg
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.536
r_dihedral_angle_3_deg18.109
r_dihedral_angle_4_deg17.854
r_dihedral_angle_1_deg8.651
r_angle_refined_deg1.595
r_chiral_restr0.134
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_sphericity_bonded
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_bond_other_d
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_scbond_it
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_xyhbond_nbd_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms23191
Nucleic Acid Atoms
Solvent Atoms75
Heterogen Atoms909

Software

Software
Software NamePurpose
PHENIXmodel building
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHENIXphasing