3W9T

pore-forming CEL-III


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.241 

wwPDB Validation 3D Report Full Report



Literature

Hemolytic lectin CEL-III heptamer reveals its transmembrane pore-formation mechanism

Unno, H.Goda, S.Hatakeyama, T.

(2014) J Biol Chem 


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemolytic lectin CEL-III
A, B, C, D, E, F, G
432Cucumaria echinataMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
W9T
Query on W9T

Download CCD File 
A, B, C, D, E, F, G
4-O-beta-D-galactopyranosyl-beta-D-fructofuranose
C12 H22 O11
JCQLYHFGKNRPGE-FCVZTGTOSA-N
 Ligand Interaction
CA
Query on CA

Download CCD File 
A, B, C, D, E, F, G
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download CCD File 
A, B, C, D, E, F, G
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
PCA
Query on PCA
A,B,C,D,E,F,G
L-PEPTIDE LINKINGC5 H7 N O3GLN
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.241 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 219.8α = 90
b = 228.65β = 127.13
c = 133.02γ = 90
Software Package:
Software NamePurpose
PHENIXmodel building
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-03-19
    Type: Initial release
  • Version 1.1: 2014-05-21
    Changes: Other
  • Version 2.0: 2018-07-25
    Changes: Advisory, Data collection, Database references, Non-polymer description, Source and taxonomy, Structure summary
  • Version 3.0: 2019-12-25
    Changes: Derived calculations, Polymer sequence